View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0163_low_6 (Length: 262)
Name: NF0163_low_6
Description: NF0163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0163_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 6026182 - 6026407
Alignment:
| Q |
30 |
aagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaagcagaacaagccatttggggattatgtatgcaaat |
129 |
Q |
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| T |
6026182 |
aagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaagcagaacaagccatttggggattatgtatgcaaat |
6026281 |
T |
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| Q |
130 |
tatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtattattttccattttaattatctactacattgtattatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6026282 |
tatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtattattttccattttaattatctactacattgtattatg |
6026381 |
T |
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| Q |
230 |
actcagaatgatgatctttcatctca |
255 |
Q |
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||||||||||||||||||| |||||| |
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| T |
6026382 |
actcagaatgatgatcttttatctca |
6026407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
120 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
179 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 42824174 - 42824239
Alignment:
| Q |
30 |
aagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
95 |
Q |
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||||||||||||||||||||| || |||||||| || |||||||||||| | |||||| ||||| |
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| T |
42824174 |
aagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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