View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0163_low_8 (Length: 250)
Name: NF0163_low_8
Description: NF0163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0163_low_8 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 304232 - 304013
Alignment:
| Q |
15 |
aagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaagcaatatgtgatcatgaggagaagtgggttcaaatatgatgatattgtctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
304232 |
aagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaagcaatatgtgatcatgaggagaagtgggttcaaatatgatgatattgtctt |
304133 |
T |
|
| Q |
115 |
tgttacaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctatttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
304132 |
tgttacaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctatctt |
304033 |
T |
|
| Q |
215 |
gtgagtacacctgtagtagt |
234 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
304032 |
gtgagtacacctgtagtagt |
304013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 12465843 - 12465959
Alignment:
| Q |
119 |
acaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctattttgtga |
218 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||| || | ||||||||| ||||| || ||||||| | |||||||||||| | |||||| |
|
|
| T |
12465843 |
acaagtgtggtgaccataataggttgtcttatacaagggaggtttttgttgaattctatgcacatgcttggttgttaggcatctttgatcaaacttgtga |
12465942 |
T |
|
| Q |
219 |
gtacacctgtagtagtt |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12465943 |
gtacacctgtagtagtt |
12465959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 12465736 - 12465785
Alignment:
| Q |
15 |
aagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaag |
64 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
12465736 |
aagggacattcttgttttgttggagttgggaatgtattattaaagctaag |
12465785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 479177 - 479063
Alignment:
| Q |
119 |
acaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctattttgtga |
218 |
Q |
| |
|
||||||||||||| | ||||| ||| |||||||||||||||| || ||||||||| | ||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
479177 |
acaagtgtggtggccataataagtgatcttatacaagggaggattttcttgaattttatgcacttgtttggttgttttgcatctttgatcatacttgtga |
479078 |
T |
|
| Q |
219 |
gtacacctgtagtag |
233 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
479077 |
gtacacctatagtag |
479063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 539 times since January 2019
Visitors: 2229