View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0163_low_9 (Length: 246)
Name: NF0163_low_9
Description: NF0163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0163_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 34675188 - 34675366
Alignment:
| Q |
16 |
catcatcaagctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaaga |
115 |
Q |
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| T |
34675188 |
catcatcaagctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaaga |
34675287 |
T |
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| Q |
116 |
gcctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcagcgtcacaaagatcctcaacgaactcctccctcac |
194 |
Q |
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| T |
34675288 |
acctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcac |
34675366 |
T |
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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 43583177 - 43583355
Alignment:
| Q |
16 |
catcatcaagctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaaga |
115 |
Q |
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||||||| ||||||||||||||||| ||||| |||||||||||| | | |||||||||||||||| |||||||||||||| ||||| || || ||||| |
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| T |
43583177 |
catcatccagctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaaga |
43583276 |
T |
|
| Q |
116 |
gcctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcagcgtcacaaagatcctcaacgaactcctccctcac |
194 |
Q |
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||||||||||||||||||||| ||||| || || || || |||| ||||||||| | ||||| ||||| ||||||||| |
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| T |
43583277 |
gcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctccctcac |
43583355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 12360861 - 12360774
Alignment:
| Q |
72 |
tgcatgccaggctgcatctttgcaccatactttccaccggaagagcctcaaaaatttgcaaacgttcacaagatcttcggcgcaagca |
159 |
Q |
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|||||||||| ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| |||||||| || || || ||||||| |
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| T |
12360861 |
tgcatgccagattgcatatttgctccatatttcccaccagaagaaccacaaaaatttgcaaatgttcacaaaatatttggtgcaagca |
12360774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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