View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0164_low_2 (Length: 344)
Name: NF0164_low_2
Description: NF0164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0164_low_2 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 18663010 - 18663327
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663010 |
ggagtagagaggaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
18663109 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663110 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
18663209 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
18663210 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaatagggattgttggatatttgaaggtgtt |
18663309 |
T |
|
| Q |
307 |
ttagatgtaagatgatgt |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18663310 |
ttagatgtaagatgatgt |
18663327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 18663216 - 18663528
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | |||||| ||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
18663216 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaatagggattgttggatatttgaaggtgttttagat |
18663315 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663316 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
18663415 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
18663416 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttaga |
18663515 |
T |
|
| Q |
312 |
tgtaagatgatgt |
324 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18663516 |
tgtaagatgatgt |
18663528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 18663417 - 18663696
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | || ||| |||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
18663417 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagat |
18663516 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663517 |
gtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
18663616 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
291 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
18663617 |
tagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
18663696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 18662938 - 18663126
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18662938 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
18663037 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18663038 |
taaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
18663126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 13671176 - 13671493
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671176 |
ggagtagagaggaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
13671275 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671276 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
13671375 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
13671376 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgtt |
13671475 |
T |
|
| Q |
307 |
ttagatgtaagatgatgt |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13671476 |
ttagatgtaagatgatgt |
13671493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 13656530 - 13656847
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656530 |
ggagtagagaggaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcttttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
13656629 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656630 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
13656729 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
13656730 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtatatatggattgttggatatttgaaggtgtt |
13656829 |
T |
|
| Q |
307 |
ttagatgtaagatgatgt |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13656830 |
ttagatgtaagatgatgt |
13656847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 13671382 - 13671694
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | || ||| |||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
13671382 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagat |
13671481 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671482 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
13671581 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
13671582 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttaga |
13671681 |
T |
|
| Q |
312 |
tgtaagatgatgt |
324 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13671682 |
tgtaagatgatgt |
13671694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 5739228 - 5739512
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||||||||| |||||||| | || ||| |||||| | | | ||||||||||||||||||||| |
|
|
| T |
5739228 |
ggagtagagaggaaaggtgggaaatttgtatgtgtttgagatatgagatgatgtgtaggctgctttgtagatagcgattgttggatatttgaaggtgtgt |
5739327 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5739328 |
tagatgtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
5739427 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
291 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
5739428 |
tgaagtagagaggaaaggtgggaaatttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
5739512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 13671583 - 13671862
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | || ||| |||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
13671583 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagat |
13671682 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671683 |
gtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
13671782 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
291 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
13671783 |
tagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
13671862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 13656736 - 13657015
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaa-gttggatatttgaaggtgtgttaga |
110 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | |||||| ||||| | |||| ||||||||||||||||||| ||||| |
|
|
| T |
13656736 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtatata-tggattgttggatatttgaaggtgttttaga |
13656834 |
T |
|
| Q |
111 |
tgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaa |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656835 |
tgtaagatgatgtgtaggtttcattgtagagtggggttgttggatatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaa |
13656934 |
T |
|
| Q |
211 |
gtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
291 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
13656935 |
gtagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
13657015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 5739156 - 5739344
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
5739156 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagtatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
5739255 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5739256 |
tatgtgtttgagatatgagatgatgtgtaggctgctttgtagatagcgattgttggatatttgaaggtgtgttagatgtaagatgatgt |
5739344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 13671104 - 13671292
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
13671104 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
13671203 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13671204 |
taaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
13671292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 13656458 - 13656646
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
13656458 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
13656557 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | |||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13656558 |
taaatgtttgagatatgggatgatgtttcttttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
13656646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 18581830 - 18581513
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581830 |
ggagtagagaggaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcgattgccttgtaggttgtggaagttggatatttgaaggtgtgt |
18581731 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581730 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
18581631 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
18581630 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgtt |
18581531 |
T |
|
| Q |
307 |
ttagatgtaagatgatgt |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18581530 |
ttagatgtaagatgatgt |
18581513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 18581624 - 18581345
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | || ||| |||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
18581624 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagat |
18581525 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581524 |
gtaagatgatgtgtaggtttcattgtagagcggggttgttgggtatttgtaggtatttgagaaatgggagcatggacagtagacatttgtggacttgaag |
18581425 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
291 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
18581424 |
tagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
18581345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 18581902 - 18581714
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18581902 |
gtagagtggggagattggatatttgtaggtatttgagaggtgagagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
18581803 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | | |||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18581802 |
taaatgtttgagatatgggatgatgtttcgattgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
18581714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 37461501 - 37461184
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37461501 |
ggagtagagaggaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaaattggatatttgaaggtgtgt |
37461402 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37461401 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggaaagtagacatttgtggact |
37461302 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37461301 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggatgctttgtaaataaggattgttggatatttgaaggtgtt |
37461202 |
T |
|
| Q |
307 |
ttagatgtaagatgatgt |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37461201 |
ttagatgtaagatgatgt |
37461184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 37461295 - 37461057
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | || ||| ||||| | | ||||||||||||||||||| |||||| |
|
|
| T |
37461295 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggatgctttgtaaataaggattgttggatatttgaaggtgttttagat |
37461196 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37461195 |
gtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacattagacatttgtggacttgaag |
37461096 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagata |
250 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37461095 |
tagagaggaaaggtgggaagttagtatgtgtttgagata |
37461057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 37461573 - 37461385
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
37461573 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
37461474 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37461473 |
taaatgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaaattggatatttgaaggtgtgttagatgtaagatgatgt |
37461385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 12924104 - 12923790
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924104 |
ggagtagagaggaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
12924005 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924004 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
12923905 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
12923904 |
tgaagtagagaggaaaggtgggaagtttgtatttttttgaga---gggatgatgtgtaggttgctttgtaaatagggattgttggatatttgaaggtgtt |
12923808 |
T |
|
| Q |
307 |
ttagatgtaagatgatgt |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12923807 |
ttagatgtaagatgatgt |
12923790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 86 - 324
Target Start/End: Complemental strand, 12923827 - 12923589
Alignment:
| Q |
86 |
gttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
185 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923827 |
gttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
12923728 |
T |
|
| Q |
186 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggat |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
12923727 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggat |
12923628 |
T |
|
| Q |
286 |
ttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923627 |
tgttggatatttgaaggtgttttagatgtaagatgatgt |
12923589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 12923700 - 12923421
Alignment:
| Q |
12 |
agagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagat |
111 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||| | || ||| |||||| | | | ||||||||||||||||||| |||||| |
|
|
| T |
12923700 |
agagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagat |
12923601 |
T |
|
| Q |
112 |
gtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaag |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12923600 |
gtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggatagtagacatttgtggacttgaag |
12923501 |
T |
|
| Q |
212 |
tagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
291 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
12923500 |
tagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
12923421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 12924176 - 12923988
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
12924176 |
gtagagtggggagattggatatatgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
12924077 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12924076 |
taaatgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
12923988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 19540742 - 19540801
Alignment:
| Q |
106 |
ttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggt |
165 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19540742 |
ttagatgtgagatgatatgtaggttgccttgtagagtggggttgttgggtatttgtaggt |
19540801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 19540631 - 19540702
Alignment:
| Q |
93 |
atttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggt |
165 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
19540631 |
atttgaaggtattttagatgtaagatgatgtgtagatttccttgtagagtggtgttgtt-gatatttgtaggt |
19540702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 22838 - 22565
Alignment:
| Q |
7 |
ggagcagagaggaaaggtggaaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgt |
106 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22838 |
ggagtagagagcaaaggtgggaaatttgtaaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaaattggatatttgaaggtgtgt |
22739 |
T |
|
| Q |
107 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggact |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22738 |
tagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggaaagtagacatttgtggact |
22639 |
T |
|
| Q |
207 |
tgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaata |
280 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22638 |
tgaagtagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaata |
22565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 22910 - 22722
Alignment:
| Q |
136 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
22910 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagagcaaaggtgggaaatttg |
22811 |
T |
|
| Q |
236 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
324 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22810 |
taaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaaattggatatttgaaggtgtgttagatgtaagatgatgt |
22722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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