View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0165-Insertion-10 (Length: 361)

Name: NF0165-Insertion-10
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0165-Insertion-10
NF0165-Insertion-10
[»] chr2 (6 HSPs)
chr2 (186-361)||(13448599-13448774)
chr2 (8-140)||(13448421-13448553)
chr2 (7-140)||(13454891-13455024)
chr2 (186-361)||(13440436-13440611)
chr2 (7-140)||(13440257-13440390)
chr2 (187-342)||(13455071-13455226)
[»] chr5 (4 HSPs)
chr5 (7-134)||(12540742-12540869)
chr5 (186-336)||(28385570-28385720)
chr5 (7-131)||(28385391-28385515)
chr5 (186-361)||(12540921-12541096)
[»] chr7 (2 HSPs)
chr7 (188-361)||(3417295-3417468)
chr7 (9-140)||(3417516-3417647)
[»] scaffold0536 (2 HSPs)
scaffold0536 (186-300)||(6337-6451)
scaffold0536 (51-140)||(6497-6589)
[»] chr4 (6 HSPs)
chr4 (186-300)||(48958383-48958497)
chr4 (10-140)||(48958204-48958337)
chr4 (10-140)||(48961353-48961486)
chr4 (22-140)||(48965401-48965519)
chr4 (13-140)||(48912331-48912461)
chr4 (186-262)||(48912209-48912285)
[»] chr6 (3 HSPs)
chr6 (22-105)||(12590196-12590279)
chr6 (187-361)||(12589934-12590108)
chr6 (28-104)||(12483492-12483568)
[»] chr8 (2 HSPs)
chr8 (235-322)||(12641285-12641372)
chr8 (18-104)||(12641506-12641592)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 186 - 361
Target Start/End: Original strand, 13448599 - 13448774
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448599 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 13448698  T
Q  286 tacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13448699 tacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccc 13448774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 13448421 - 13448553
Alignment:
Q  8 ttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttccc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13448421 ttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttccc 13448520  T
Q  108 gatatttctctcttcaaatcccttcggtaacca 140  Q
    |||||||||||||||||||||||||||||||||    
T  13448521 gatatttctctcttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 13454891 - 13455024
Alignment:
Q  7 attgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  13454891 attgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct 13454990  T
Q  107 cgatatttctctcttcaaatcccttcggtaacca 140  Q
    |||| ||| ||||||||||||||||||| |||||    
T  13454991 cgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 186 - 361
Target Start/End: Original strand, 13440436 - 13440611
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 285  Q
    ||||||||||||||||||||||||||  ||||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  13440436 aggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatg 13440535  T
Q  286 tacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc 361  Q
    |||||||| ||||||||| ||||||| ||||||||||||| ||  |||||||  ||| || ||||||| |||||||    
T  13440536 tacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccc 13440611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 13440257 - 13440390
Alignment:
Q  7 attgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcc 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||    
T  13440257 attgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcc 13440356  T
Q  107 cgatatttctctcttcaaatcccttcggtaacca 140  Q
      || ||||||||||| |||||||| || |||||    
T  13440357 taatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 342
Target Start/End: Original strand, 13455071 - 13455226
Alignment:
Q  187 ggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgt 286  Q
    ||||||||||||||||| || ||||| | ||||||||  |  ||||||||||| ||||||||||||| |||  |||| ||||||||||||||||||||||    
T  13455071 ggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgt 13455170  T
Q  287 acaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattc 342  Q
    |||| |||||||||||||||| ||| || ||||| ||||||| |||||| ||||||    
T  13455171 acaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattc 13455226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 12540742 - 12540869
Alignment:
Q  7 attgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcc 106  Q
    |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  12540742 attgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttc 12540841  T
Q  107 cgatatttctctcttcaaatcccttcgg 134  Q
    | || |||||||| ||||||||||||||    
T  12540842 caatgtttctctcctcaaatcccttcgg 12540869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 28385570 - 28385720
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 285  Q
    ||||||||||||||||||||||||||| ||||||||||  || ||||| ||||| ||||||||||||||||| |||| ||| ||||||||||||||||||    
T  28385570 aggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatg 28385669  T
Q  286 tacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgc 336  Q
    ||||  ||||||||||||| || ||| | ||||||  |||||| |||||||    
T  28385670 tacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgc 28385720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 28385391 - 28385515
Alignment:
Q  7 attgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcc 106  Q
    ||||||||||| |||||||| |||| |||||||||||| ||||||| ||||||||||  ||||||||||||||||||||| || || ||||||||||| |    
T  28385391 attgagttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttc 28385490  T
Q  107 cgatatttctctcttcaaatccctt 131  Q
    | || |||||||| |||||||||||    
T  28385491 caatgtttctctcctcaaatccctt 28385515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 361
Target Start/End: Original strand, 12540921 - 12541096
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 285  Q
    |||||||||||||||||||||||||||   | ||||||  |||||||| ||||| ||||||||||| ||| | ||||  || ||||||||||||||||||    
T  12540921 aggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg 12541020  T
Q  286 tacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc 361  Q
    |||| |||||||||||||  || ||| | |||||| || |||  ||||||| |  |||||||||||||||||||||    
T  12541021 tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccc 12541096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 188 - 361
Target Start/End: Complemental strand, 3417468 - 3417295
Alignment:
Q  188 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 287  Q
    ||||||||||||||||||||||||| ||||||||||| ||  |||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  288 caacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc 361  Q
    ||||||||||||||||   | ||| | |||||||| ||||| ||| ||| || || |||||||||| |||||||    
T  3417368 caacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccc 3417295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 3417647 - 3417516
Alignment:
Q  9 tgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccg 108  Q
    |||||||||||| ||||| |||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||     
T  3417647 tgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttcca 3417548  T
Q  109 atatttctctcttcaaatcccttcggtaacca 140  Q
    || |||||||| |||||||||||||| |||||    
T  3417547 atgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 6451 - 6337
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 285  Q
    |||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||| ||||||||||| |  |||  |   | ||||||||| ||||||    
T  6451 aggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatg 6352  T
Q  286 tacaacactgagtta 300  Q
    |||||||||||||||    
T  6351 tacaacactgagtta 6337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 6589 - 6497
Alignment:
Q  51 gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaacca 140  Q
    ||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||   ||||||||||||||||| |||||||| || |||||    
T  6589 gtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 48958383 - 48958497
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 285  Q
    ||||||||||||||  |||  |||||| |||||||||||| |||| || ||||| || |||||||||||||| |||||    ||||||||||| ||||||    
T  48958383 aggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatg 48958482  T
Q  286 tacaacactgagtta 300  Q
    |||||||||||||||    
T  48958483 tacaacactgagtta 48958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 48958204 - 48958337
Alignment:
Q  10 gagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacc---cttcttcc 106  Q
    ||||||| ||||||||| ||||||||| | ||||| |||  ||||||||  |||  ||||||||||||||| |||||||||||||||||   |||||| |    
T  48958204 gagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttc 48958303  T
Q  107 cgatatttctctcttcaaatcccttcggtaacca 140  Q
    | || ||||||||||| ||||| ||||| |||||    
T  48958304 caatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 48961353 - 48961486
Alignment:
Q  10 gagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcc--- 106  Q
    ||||||| ||||||||||||||||||  | ||||| || | ||||| ||  ||| |||||||||||||||| ||| ||||||||||||||||||||        
T  48961353 gagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttctttt 48961452  T
Q  107 cgatatttctctcttcaaatcccttcggtaacca 140  Q
    | || ||||||||||||||||| ||||| |||||    
T  48961453 caatgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 48965401 - 48965519
Alignment:
Q  22 caatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctctt 121  Q
    ||||| ||||||||  | ||||| || ||||||||||  |||  ||| || || |||||||||||||| |||||||||||||| || || ||||||||||    
T  48965401 caatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctctt 48965500  T
Q  122 caaatcccttcggtaacca 140  Q
    | |||||||| ||||||||    
T  48965501 cgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 48912461 - 48912331
Alignment:
Q  13 ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccga 109  Q
    |||| ||| ||||| ||||||||| | ||||| || | ||||||||  ||| |||| ||||| ||||||||| |||| |||| | ||||||||   ||||    
T  48912461 ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga 48912362  T
Q  110 tatttctctcttcaaatcccttcggtaacca 140  Q
    || ||||||||||||| ||||| || |||||    
T  48912361 taattctctcttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 48912285 - 48912209
Alignment:
Q  186 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 262  Q
    |||||||||||||||||||  |||||  |||||||| ||| | || || ||||| || ||||||||||| |||||||    
T  48912285 aggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 48912209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 12590279 - 12590196
Alignment:
Q  22 caatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc 105  Q
    ||||| ||||||||  | |||||||||  ||||||||  ||| | |||||||||||||||||||||||||||||||||||||||    
T  12590279 caatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttc 12590196  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 361
Target Start/End: Complemental strand, 12590108 - 12589934
Alignment:
Q  187 ggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgt 286  Q
    |||| |||||||| ||||  ||| || |||||||||||  |||| |  ||||| || ||||||||||| || ||||||   ||||| ||||| |||||||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  287 acaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc 361  Q
    ||||||| |||||| ||| ||  || |  ||||||||||| | ||| ||||| ||| || ||| |||||||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccc 12589934  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 12483568 - 12483492
Alignment:
Q  28 gtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttctt 104  Q
    ||||||||| | |||||||||||||||||||| |||   || ||||| ||||| ||||| ||||| |||||| ||||    
T  12483568 gtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatctt 12483492  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 12641372 - 12641285
Alignment:
Q  235 atctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaac 322  Q
    |||||||| |||||||||||||| |||||   |||||| |||||||||||||| |||||||| ||| ||  || ||||| ||||||||    
T  12641372 atctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagccaac 12641285  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 12641592 - 12641506
Alignment:
Q  18 cccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttctt 104  Q
    ||||||||||||||| ||| | ||||| |||| |||||| || ||| | ||||||||||||||  |||||||||| ||||| |||||    
T  12641592 cccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttctt 12641506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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