View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0165-Insertion-2 (Length: 745)

Name: NF0165-Insertion-2
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0165-Insertion-2
NF0165-Insertion-2
[»] chr7 (1 HSPs)
chr7 (8-745)||(40383244-40383981)


Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 8 - 745
Target Start/End: Original strand, 40383244 - 40383981
Alignment:
Q  8 ctcttgaacaccttttggtgaatcgtcaagacggtaaaagatggtggccaagattcctccggtaaccagaactgcaccgagacggattccgaataattcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383244 ctcttgaacaccttttggtgaatcgtcaagacggtaaaagatggtggccaagattcctccggtaaccagaactgcaccgagacggattccgaataattcc 40383343  T
Q  108 ggcatccgtcttgagtttagtagagaccgttttccaataactgccatttcaatccaaaacggatttgcaaaagtggcaactgaggacgcaattgagttac 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383344 ggcatccgtcttgagtttagtagagaccgttttccaataaccgccatttcaatccaaaacggatttgcaaaagtggcaactgaggacgcaattgagttac 40383443  T
Q  208 cgtttccattaccaccattagttcctgagactaatttccctcttgagatactggcactgatggcgtcttttaacgacattttaggtccgttaacggcagt 307  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40383444 cgttgccattaccaccgttagttcctgagactaatttccctcttgagatactcgcactgatggcgtcttttaacgacattttaggtccgttaacggcagt 40383543  T
Q  308 tacagatgctggtttatactttaactgccatgacttgttgaactctacaaggctttttgttcctccgggagtctcttcaagctcacggattagatccagt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  40383544 tacagatgctggtttatactttaactgccatgacttgttgaactctacaaggctttttgttcctccgggattttcttcaagctcacggattagatccagt 40383643  T
Q  408 gcgaattctgtcttgttctcgttttctggtatgggatggccgaattcatggaaaaaactagggaggttcgccggagagccgctgtagacggtttgtccat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383644 gcgaattctgtcttgttctcgttttctggtatgggatggccgaattcatggaaaaaactagggaggttcgccggagagccgctgtagacggtttgtccat 40383743  T
Q  508 gggaaaggaagatcaaacggtctaacaaaccaaggattctgtagcttggttgatgaacggtcatcatgacgatgctaccgctctgagcaattctctgcaa 607  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383744 gggaaaggaagatcaaacggtctaacaaaccgaggattctgtagcttggttgatgaacggtcatcatgacgatgctaccgctctgagcaattctctgcaa 40383843  T
Q  608 aaccttcaccaccatgtaagcgcttgtagagtcaagtccagaggttggttcatccaagaacaaaatgattggatcgtggatgatgtctgtgccgatggag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383844 aaccttcaccaccatgtaagcgcttgtagagtcaagtccagaggttggttcatccaagaacaaaatgattggatcgtggatgatgtctgtgccgatggag 40383943  T
Q  708 acacggcggcgttctccaccggaaacaccacggtgacc 745  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40383944 acacggcggcgttctccaccggaaacaccacggtgacc 40383981  T

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