View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0165-Insertion-3 (Length: 744)

Name: NF0165-Insertion-3
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0165-Insertion-3
NF0165-Insertion-3
[»] chr8 (15 HSPs)
chr8 (709-743)||(44012283-44012317)
chr8 (711-743)||(35455479-35455511)
chr8 (713-743)||(4135764-4135794)
chr8 (709-743)||(34865697-34865731)
chr8 (709-743)||(42159184-42159218)
chr8 (710-743)||(8378263-8378296)
chr8 (710-743)||(17911031-17911064)
chr8 (710-743)||(18673442-18673475)
chr8 (710-743)||(20091150-20091183)
chr8 (710-743)||(26746902-26746935)
chr8 (710-743)||(27667542-27667575)
chr8 (710-743)||(30852048-30852081)
chr8 (710-743)||(32629768-32629801)
chr8 (710-743)||(38896633-38896666)
chr8 (710-743)||(42927189-42927222)
[»] chr4 (19 HSPs)
chr4 (709-743)||(51817118-51817152)
chr4 (710-743)||(17609152-17609185)
chr4 (711-743)||(35877017-35877049)
chr4 (711-743)||(37390570-37390602)
chr4 (710-741)||(3761812-3761843)
chr4 (711-742)||(41855063-41855094)
chr4 (709-743)||(37669989-37670023)
chr4 (710-743)||(4294103-4294136)
chr4 (710-743)||(7258083-7258116)
chr4 (710-743)||(22128794-22128827)
chr4 (711-744)||(23949710-23949743)
chr4 (709-742)||(33501394-33501427)
chr4 (710-743)||(34246829-34246862)
chr4 (710-743)||(39915844-39915877)
chr4 (710-743)||(42507710-42507743)
chr4 (710-743)||(48380647-48380680)
chr4 (710-743)||(50690592-50690625)
chr4 (710-743)||(51779607-51779640)
chr4 (710-743)||(54270843-54270876)
[»] chr3 (18 HSPs)
chr3 (709-743)||(38999517-38999551)
chr3 (710-743)||(48910514-48910547)
chr3 (709-743)||(8176430-8176464)
chr3 (709-743)||(47241235-47241269)
chr3 (709-739)||(50106232-50106262)
chr3 (710-743)||(2929864-2929897)
chr3 (710-743)||(5137646-5137679)
chr3 (710-743)||(8104304-8104337)
chr3 (710-743)||(9794546-9794579)
chr3 (710-743)||(24978903-24978936)
chr3 (710-743)||(28227045-28227078)
chr3 (710-743)||(28686337-28686370)
chr3 (710-743)||(32078093-32078126)
chr3 (710-743)||(32100256-32100289)
chr3 (710-743)||(39144581-39144614)
chr3 (710-743)||(47915996-47916029)
chr3 (710-743)||(51166457-51166490)
chr3 (710-743)||(54747882-54747915)
[»] chr1 (19 HSPs)
chr1 (709-743)||(50942694-50942728)
chr1 (710-743)||(8462455-8462488)
chr1 (710-743)||(41529183-41529216)
chr1 (710-743)||(42334432-42334465)
chr1 (709-743)||(11353633-11353667)
chr1 (709-743)||(14203005-14203039)
chr1 (709-743)||(25792229-25792263)
chr1 (709-743)||(40132300-40132334)
chr1 (710-743)||(8712052-8712085)
chr1 (710-743)||(8768623-8768656)
chr1 (710-743)||(13985444-13985477)
chr1 (710-743)||(25984449-25984482)
chr1 (710-743)||(34967505-34967538)
chr1 (709-742)||(35150190-35150223)
chr1 (710-743)||(39501757-39501790)
chr1 (710-743)||(39640342-39640375)
chr1 (710-743)||(41457878-41457911)
chr1 (710-743)||(47038486-47038519)
chr1 (710-743)||(47393556-47393589)
[»] chr7 (9 HSPs)
chr7 (710-743)||(3264418-3264451)
chr7 (709-743)||(10200482-10200516)
chr7 (709-743)||(22624387-22624421)
chr7 (710-743)||(1643680-1643713)
chr7 (710-743)||(6696795-6696828)
chr7 (709-742)||(14314641-14314674)
chr7 (710-743)||(24685602-24685635)
chr7 (710-743)||(24924346-24924379)
chr7 (710-743)||(28234315-28234348)
[»] chr6 (7 HSPs)
chr6 (710-743)||(3787166-3787199)
chr6 (709-743)||(8493572-8493606)
chr6 (709-743)||(14310941-14310975)
chr6 (710-743)||(1114488-1114521)
chr6 (710-743)||(2010243-2010276)
chr6 (710-743)||(10364644-10364677)
chr6 (710-743)||(27080508-27080541)
[»] chr2 (16 HSPs)
chr2 (710-743)||(36443587-36443620)
chr2 (710-743)||(39293420-39293453)
chr2 (709-743)||(12123043-12123077)
chr2 (709-743)||(36068177-36068211)
chr2 (710-743)||(1684311-1684344)
chr2 (710-743)||(5669181-5669214)
chr2 (710-743)||(8341655-8341688)
chr2 (710-743)||(12467703-12467736)
chr2 (710-743)||(13196436-13196469)
chr2 (710-743)||(14943438-14943471)
chr2 (710-743)||(16062602-16062635)
chr2 (710-743)||(22050642-22050675)
chr2 (710-743)||(25899074-25899107)
chr2 (710-743)||(27244960-27244993)
chr2 (710-743)||(40833542-40833575)
chr2 (710-743)||(44710008-44710041)
[»] scaffold0154 (1 HSPs)
scaffold0154 (709-743)||(4154-4188)
[»] chr5 (10 HSPs)
chr5 (709-743)||(39895974-39896008)
chr5 (709-743)||(39990375-39990409)
chr5 (710-743)||(12503919-12503952)
chr5 (710-743)||(15268448-15268481)
chr5 (710-743)||(21582692-21582725)
chr5 (710-743)||(21772822-21772855)
chr5 (710-743)||(25784705-25784738)
chr5 (710-743)||(29816278-29816311)
chr5 (710-743)||(36487357-36487390)
chr5 (710-743)||(40555143-40555176)
[»] scaffold0160 (1 HSPs)
scaffold0160 (710-743)||(25935-25968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (709-742)||(39837-39870)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 44012283 - 44012317
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||||    
T  44012283 tcaatgaaacattaatgttattttttctattatat 44012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 711 - 743
Target Start/End: Original strand, 35455479 - 35455511
Alignment:
Q  711 aatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||    
T  35455479 aatgaaacattaatgttattttttctattatat 35455511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 743
Target Start/End: Original strand, 4135764 - 4135794
Alignment:
Q  713 tgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||    
T  4135764 tgaaacattaatgttattttttctattatat 4135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 34865697 - 34865731
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||| ||||||||||||||||||||||||||    
T  34865697 tcaatgaatcattaatgttattttttctattatat 34865731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 42159218 - 42159184
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||| |||||||||||||||||||||||||||||    
T  42159218 tcaataaaacattaatgttattttttctattatat 42159184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 8378296 - 8378263
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  8378296 caatgaaacattaatgttatttttcctattatat 8378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 17911031 - 17911064
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  17911031 caatgaaacattaatgttaatttttctattatat 17911064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 18673442 - 18673475
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  18673442 caatgaaacattaatgttactttttctattatat 18673475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 20091183 - 20091150
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  20091183 caatgaaacattaatgttatttttcctattatat 20091150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 26746902 - 26746935
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||| ||||||||||||||||||    
T  26746902 caatgaaacattaatattattttttctattatat 26746935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 27667542 - 27667575
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  27667542 caatgaaacattaatgttatttttcctattatat 27667575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 30852048 - 30852081
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  30852048 caatgaaacattaatgttatttttcctattatat 30852081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 32629801 - 32629768
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||| |||||||||||||||||||||||||||||    
T  32629801 caataaaacattaatgttattttttctattatat 32629768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 38896666 - 38896633
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  38896666 caatgaaacattaatgttatttttcctattatat 38896633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 42927189 - 42927222
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  42927189 caatgaaacattaatgttatttttcctattatat 42927222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 51817152 - 51817118
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||||    
T  51817152 tcaatgaaacattaatgttattttttctattatat 51817118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 17609185 - 17609152
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  17609185 caatgaaacattaatgttattttttctattatat 17609152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 711 - 743
Target Start/End: Complemental strand, 35877049 - 35877017
Alignment:
Q  711 aatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||    
T  35877049 aatgaaacattaatgttattttttctattatat 35877017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 711 - 743
Target Start/End: Original strand, 37390570 - 37390602
Alignment:
Q  711 aatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||    
T  37390570 aatgaaacattaatgttattttttctattatat 37390602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 741
Target Start/End: Original strand, 3761812 - 3761843
Alignment:
Q  710 caatgaaacattaatgttattttttctattat 741  Q
    ||||||||||||||||||||||||||||||||    
T  3761812 caatgaaacattaatgttattttttctattat 3761843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 742
Target Start/End: Original strand, 41855063 - 41855094
Alignment:
Q  711 aatgaaacattaatgttattttttctattata 742  Q
    ||||||||||||||||||||||||||||||||    
T  41855063 aatgaaacattaatgttattttttctattata 41855094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 37669989 - 37670023
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  37669989 tcaatgaaacattaatgttatttttcctattatat 37670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 4294136 - 4294103
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  4294136 caatgaaacattaatgttatttttcctattatat 4294103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 7258116 - 7258083
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  7258116 caatgaaacattaatgttactttttctattatat 7258083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 22128794 - 22128827
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||| |||||||||||||    
T  22128794 caatgaaacattaatgttatcttttctattatat 22128827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 744
Target Start/End: Complemental strand, 23949743 - 23949710
Alignment:
Q  711 aatgaaacattaatgttattttttctattatata 744  Q
    |||| |||||||||||||||||||||||||||||    
T  23949743 aatgcaacattaatgttattttttctattatata 23949710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 742
Target Start/End: Original strand, 33501394 - 33501427
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattata 742  Q
    |||||||||||||||||||| |||||||||||||    
T  33501394 tcaatgaaacattaatgttactttttctattata 33501427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 34246829 - 34246862
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||| ||||    
T  34246829 caatgaaacattaatgttattttttctataatat 34246862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 39915844 - 39915877
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  39915844 caatgaaacattaatgttatttttcctattatat 39915877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 42507743 - 42507710
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  42507743 caatgaaacattaatgttactttttctattatat 42507710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 48380647 - 48380680
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  48380647 caatgaaacattaatgttatttttcctattatat 48380680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 50690625 - 50690592
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  50690625 caatgaaacattaatgttatttttcctattatat 50690592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 51779607 - 51779640
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  51779607 caatgaaacattaatgttactttttctattatat 51779640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 54270843 - 54270876
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  54270843 caatgaaatattaatgttattttttctattatat 54270876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 38999517 - 38999551
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||||    
T  38999517 tcaatgaaacattaatgttattttttctattatat 38999551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 48910547 - 48910514
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  48910547 caatgaaacattaatgttattttttctattatat 48910514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 8176430 - 8176464
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||| ||||||||||||||||||    
T  8176430 tcaatgaaacattaattttattttttctattatat 8176464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 47241235 - 47241269
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  47241235 tcaatgaaacattaatgttatttttcctattatat 47241269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 739
Target Start/End: Complemental strand, 50106262 - 50106232
Alignment:
Q  709 tcaatgaaacattaatgttattttttctatt 739  Q
    |||||||||||||||||||||||||||||||    
T  50106262 tcaatgaaacattaatgttattttttctatt 50106232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 2929897 - 2929864
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  2929897 caatgaaacattaatgttatttttcctattatat 2929864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 5137679 - 5137646
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  5137679 caatgaaacattaatgttatttttcctattatat 5137646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 8104304 - 8104337
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  8104304 caatgaaacattaatgttatttttcctattatat 8104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 9794546 - 9794579
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  9794546 caatgaaatattaatgttattttttctattatat 9794579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 24978903 - 24978936
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  24978903 caatgaaacattaatgttatttttcctattatat 24978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 28227045 - 28227078
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  28227045 caatgaaacattaatgttatttttcctattatat 28227078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 28686370 - 28686337
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  28686370 caatgaaacattaatgttactttttctattatat 28686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 32078093 - 32078126
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  32078093 caatgaaacattaatgttatttttcctattatat 32078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 32100289 - 32100256
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  32100289 caatgaaacattaatgttatttttcctattatat 32100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 39144614 - 39144581
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  39144614 caatgaaacattaatgttatttttcctattatat 39144581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 47916029 - 47915996
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  47916029 caatgaaatattaatgttattttttctattatat 47915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 51166490 - 51166457
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  51166490 caatgaaacattaatgttatttttcctattatat 51166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 54747915 - 54747882
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  54747915 caatgaaaaattaatgttattttttctattatat 54747882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 50942694 - 50942728
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||||||||||||||    
T  50942694 tcaatgaaacattaatgttattttttctattatat 50942728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 8462488 - 8462455
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  8462488 caatgaaacattaatgttattttttctattatat 8462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 41529183 - 41529216
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  41529183 caatgaaacattaatgttattttttctattatat 41529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 42334465 - 42334432
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  42334465 caatgaaacattaatgttattttttctattatat 42334432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 11353633 - 11353667
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||| ||||||||||||||    
T  11353633 tcaatgaaacattaatgttactttttctattatat 11353667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 14203005 - 14203039
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  14203005 tcaatgaaacattaatgttatttttcctattatat 14203039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 25792229 - 25792263
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  25792229 tcaatgaaacattaatgttatttttcctattatat 25792263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 40132300 - 40132334
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  40132300 tcaatgaaacattaatgttatttttcctattatat 40132334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 8712085 - 8712052
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  8712085 caatgaaacattaatgttactttttctattatat 8712052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 8768656 - 8768623
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  8768656 caatgaaatattaatgttattttttctattatat 8768623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 13985477 - 13985444
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  13985477 caatgaaacattaatgttatttttcctattatat 13985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 25984449 - 25984482
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  25984449 caatgaaacattaatgttatttttcctattatat 25984482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 34967538 - 34967505
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  34967538 caatgaaaaattaatgttattttttctattatat 34967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 742
Target Start/End: Complemental strand, 35150223 - 35150190
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattata 742  Q
    |||||||||| |||||||||||||||||||||||    
T  35150223 tcaatgaaactttaatgttattttttctattata 35150190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 39501757 - 39501790
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  39501757 caatgaaatattaatgttattttttctattatat 39501790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 39640342 - 39640375
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  39640342 caatgaaatattaatgttattttttctattatat 39640375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 41457911 - 41457878
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  41457911 caatgaaatattaatgttattttttctattatat 41457878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 47038519 - 47038486
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  47038519 caatgaaacattaatgttatttttcctattatat 47038486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 47393589 - 47393556
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  47393589 caatgaaacattaatgttactttttctattatat 47393556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 3264418 - 3264451
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  3264418 caatgaaacattaatgttattttttctattatat 3264451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 10200516 - 10200482
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  10200516 tcaatgaaacattaatgttatttttcctattatat 10200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 22624387 - 22624421
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||| ||||||||||||||    
T  22624387 tcaatgaaacattaatgttactttttctattatat 22624421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 1643713 - 1643680
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  1643713 caatgaaacattaatgttatttttcctattatat 1643680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 6696828 - 6696795
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| ||||||||    
T  6696828 caatgaaacattaatgttattttttttattatat 6696795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 742
Target Start/End: Original strand, 14314641 - 14314674
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattata 742  Q
    ||||||||| ||||||||||||||||||||||||    
T  14314641 tcaatgaaatattaatgttattttttctattata 14314674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 24685635 - 24685602
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  24685635 caatgaaacattaatgttatttttcctattatat 24685602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 24924379 - 24924346
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  24924379 caatgaaaaattaatgttattttttctattatat 24924346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 28234348 - 28234315
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  28234348 caatgaaacattaatgttatttttcctattatat 28234315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 3787166 - 3787199
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  3787166 caatgaaacattaatgttattttttctattatat 3787199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 8493606 - 8493572
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  8493606 tcaatgaaacattaatgttatttttcctattatat 8493572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 14310975 - 14310941
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  14310975 tcaatgaaacattaatgttatttttcctattatat 14310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 1114521 - 1114488
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  1114521 caatgaaacattaatgttatttttcctattatat 1114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 2010276 - 2010243
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  2010276 caatgaaacattaatgttatttttcctattatat 2010243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 10364677 - 10364644
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  10364677 caatgaaacattaatgttactttttctattatat 10364644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 27080541 - 27080508
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  27080541 caatgaaacattaatgttatttttcctattatat 27080508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 36443587 - 36443620
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  36443587 caatgaaacattaatgttattttttctattatat 36443620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 39293420 - 39293453
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||||||||||||    
T  39293420 caatgaaacattaatgttattttttctattatat 39293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 12123077 - 12123043
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||| |||||||||||||||||||||||||||||    
T  12123077 tcaataaaacattaatgttattttttctattatat 12123043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 36068177 - 36068211
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  36068177 tcaatgaaacattaatgttatttttcctattatat 36068211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 1684344 - 1684311
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  1684344 caatgaaacattaatgttactttttctattatat 1684311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 5669214 - 5669181
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  5669214 caatgaaacattaatgttatttttcctattatat 5669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 8341688 - 8341655
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  8341688 caatgaaacattaatgttactttttctattatat 8341655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 12467703 - 12467736
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||| |||||||||||||||||    
T  12467703 caatgaaacattaatgctattttttctattatat 12467736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 13196436 - 13196469
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||| ||||||||||||||||||    
T  13196436 caatgaaacattaatattattttttctattatat 13196469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 14943471 - 14943438
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  14943471 caatgaaacattaatgttatttttcctattatat 14943438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 16062602 - 16062635
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  16062602 caatgaaacattaatgttatttttcctattatat 16062635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 22050675 - 22050642
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  22050675 caatgaaatattaatgttattttttctattatat 22050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 25899074 - 25899107
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  25899074 caatgaaacattaatgttactttttctattatat 25899107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 27244960 - 27244993
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  27244960 caatgaaacattaatgttatttttcctattatat 27244993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 40833542 - 40833575
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||| ||||||||||||||    
T  40833542 caatgaaacattaatgttactttttctattatat 40833575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 44710041 - 44710008
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  44710041 caatgaaatattaatgttattttttctattatat 44710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 4188 - 4154
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||| ||||||||||||||    
T  4188 tcaatgaaacattaatgttactttttctattatat 4154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 39896008 - 39895974
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||| ||||||||||||||||||||    
T  39896008 tcaatgaaacattactgttattttttctattatat 39895974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 39990409 - 39990375
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattatat 743  Q
    ||||||||||||||||||||||||| |||||||||    
T  39990409 tcaatgaaacattaatgttatttttcctattatat 39990375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 12503919 - 12503952
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  12503919 caatgaaacattaatgttatttttcctattatat 12503952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 15268481 - 15268448
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||| |||||||||||||||    
T  15268481 caatgaaacattaatgttgttttttctattatat 15268448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 21582725 - 21582692
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  21582725 caatgaaatattaatgttattttttctattatat 21582692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 21772855 - 21772822
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  21772855 caatgaaacattaatgttatttttcctattatat 21772822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 25784738 - 25784705
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  25784738 caatgaaacattaatgttatttttcctattatat 25784705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 29816278 - 29816311
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  29816278 caatgaaacattaatgttatttttcctattatat 29816311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 36487357 - 36487390
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    ||||||| ||||||||||||||||||||||||||    
T  36487357 caatgaagcattaatgttattttttctattatat 36487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 40555143 - 40555176
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||| |||||||||||||||||||||||||    
T  40555143 caatgaaatattaatgttattttttctattatat 40555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 25968 - 25935
Alignment:
Q  710 caatgaaacattaatgttattttttctattatat 743  Q
    |||||||||||||||||||||||| |||||||||    
T  25968 caatgaaacattaatgttatttttcctattatat 25935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 742
Target Start/End: Original strand, 39837 - 39870
Alignment:
Q  709 tcaatgaaacattaatgttattttttctattata 742  Q
    |||||||||||||||||||||||||||| |||||    
T  39837 tcaatgaaacattaatgttattttttctgttata 39870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 529 times since January 2019
Visitors: 2229