View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165-Insertion-4 (Length: 606)
Name: NF0165-Insertion-4
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 259 - 586
Target Start/End: Original strand, 40958262 - 40958591
Alignment:
| Q |
259 |
tatgttcatatttatgacaccaatcttcacctatgtgatattgttggttgataacaataaataatgcttggaatttcaccaatctttatactaaactc-- |
356 |
Q |
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| T |
40958262 |
tatgttcatatttatgacaccaatcttcacctatgtgatattgttggttgataacaataaataatgcttggaatttcaccaatcttaatactaaactctc |
40958361 |
T |
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| Q |
357 |
cccctttctaccaagagtgtaattggctaatatgatctcttaattaattaacaaactcgatccaattcttctttaacttggatttggtagttacctgttt |
456 |
Q |
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| T |
40958362 |
cccctttctaccaagagtataattggctaatatgatctcttaattaatcaacaaactcgatccaattcttctttaacttggatttggtagttacctgttt |
40958461 |
T |
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| Q |
457 |
caaaaagcttgtggcacttttgctggcttgggagtttttccttgtgattttctagggctatgtccatctggttgtctttgtatcctatttggccaagcaa |
556 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958462 |
caaaaagtttgtggcacttttgctggcttgggagtttttccttgtgatttcctagggttatgtccatctggttgtctttgtatcctatttggccaagcaa |
40958561 |
T |
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| Q |
557 |
annnnnnnatggatcattgccaactttagt |
586 |
Q |
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| T |
40958562 |
atttttttatggatcattgccaactttagt |
40958591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 55 - 262
Target Start/End: Original strand, 40958011 - 40958220
Alignment:
| Q |
55 |
aatttatttggtaaccacatttaggatatcttgaaccaaccccaaaaact--cagtccaaatatttgtctaatactcgtattcttcatacttcttttaaa |
152 |
Q |
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| T |
40958011 |
aatttatttggtaaccacatttaggatatcttgaaccaaccccaaaaactttcagtccaaatatttgtctaatactcgtattcttcatacttcttttaaa |
40958110 |
T |
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| Q |
153 |
ccgggtgattcttgtatttggcatggaattaacaagattgtaaaaatccttgggtcttgatctattatttgtagagttggtagaggtcatacatatttcc |
252 |
Q |
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| T |
40958111 |
ccgggtgattcttgtatttggcatggaattaacaagattgtaaaaatccttgggtcttgatctattatttgtagagttggtagaggtcatacatatttcc |
40958210 |
T |
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| Q |
253 |
atttgatatg |
262 |
Q |
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|||||||||| |
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| T |
40958211 |
atttgatatg |
40958220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 40957455 - 40957494
Alignment:
| Q |
8 |
cttggggtttagagatccacacttccaagaacttgaatac |
47 |
Q |
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| T |
40957455 |
cttggggtttggagatccacacttccaagaacttgaatac |
40957494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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