View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0165-Insertion-5 (Length: 499)

Name: NF0165-Insertion-5
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0165-Insertion-5
NF0165-Insertion-5
[»] chr6 (31 HSPs)
chr6 (139-390)||(4458605-4458853)
chr6 (8-176)||(4265969-4266137)
chr6 (277-390)||(4266176-4266286)
chr6 (426-499)||(4266324-4266397)
chr6 (426-496)||(4458499-4458569)
chr6 (28-94)||(4471047-4471113)
chr6 (10-181)||(4627193-4627364)
chr6 (10-176)||(4259090-4259256)
chr6 (446-496)||(4506758-4506808)
chr6 (10-88)||(4623443-4623521)
chr6 (10-79)||(4255553-4255622)
chr6 (460-496)||(4593135-4593171)
chr6 (12-79)||(4482010-4482077)
chr6 (445-496)||(4514301-4514352)
chr6 (12-79)||(4575600-4575667)
chr6 (49-107)||(4489150-4489208)
chr6 (10-79)||(3173148-3173217)
chr6 (12-77)||(4561809-4561874)
chr6 (460-492)||(4617930-4617962)
chr6 (460-499)||(4462021-4462060)
chr6 (446-496)||(4470704-4470754)
chr6 (446-496)||(4489542-4489592)
chr6 (10-91)||(4462343-4462424)
chr6 (455-496)||(4481594-4481635)
chr6 (460-496)||(3172642-3172678)
chr6 (448-496)||(4503652-4503700)
chr6 (460-496)||(4517222-4517258)
chr6 (460-496)||(4564615-4564651)
chr6 (460-496)||(4571873-4571909)
chr6 (448-496)||(4575209-4575257)
chr6 (460-492)||(4602697-4602729)
[»] chr5 (3 HSPs)
chr5 (8-172)||(24104143-24104311)
chr5 (287-387)||(24103988-24104085)
chr5 (426-499)||(24103900-24103973)
[»] scaffold0477 (1 HSPs)
scaffold0477 (28-181)||(3454-3607)
[»] scaffold0288 (1 HSPs)
scaffold0288 (28-83)||(2386-2441)
[»] chr8 (2 HSPs)
chr8 (460-496)||(20863038-20863074)
chr8 (460-496)||(1675131-1675167)
[»] chr3 (1 HSPs)
chr3 (464-496)||(1282018-1282050)
[»] chr7 (1 HSPs)
chr7 (32-91)||(3087878-3087937)
[»] scaffold0199 (1 HSPs)
scaffold0199 (460-496)||(368-404)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 139 - 390
Target Start/End: Complemental strand, 4458853 - 4458605
Alignment:
Q  139 tgattcgaaaaggtctactaccactcaaaggtaacaatatatgctccnnnnnnnnnnnnnnaagagaaatgtgcatgaatcaattgttttaaaaaatgta 238  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||    
T  4458853 tgattggaaaaggtctactaccactcaaaggtaacaatatatgctccttttttctttt---aagagaaatgtgcatgaatcaattgttttaaaaaatgta 4458757  T
Q  239 tgtctttgcaatctatacagaacatgaaggttgtaatgtctatatatatgatcacgtttagggctgcatcagtcgcattgcaattatgtgcatcatcaaa 338  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4458756 tgtgtttgcaatctatacagaacataaaggttgtaatgtctatatatgtgatcacgtttagggctgcatcagtcgcattgcgattatgtgcatcatcaaa 4458657  T
Q  339 atgacgacacaaccacaattattaatattgaaaacatgatttaaaatcttga 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4458656 atgacgacacaaccacaattattaatattaaaaacatgatttaaaatcttga 4458605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 4265969 - 4266137
Alignment:
Q  8 aattacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttctccatgcaatgcatct 107  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4265969 aattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatct 4266068  T
Q  108 acgttcttgtgtacttttcaattttctactctgattcgaaaaggtctactaccactcaaaggtaacaat 176  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4266069 acgttcttgtgtacttttcaatttcctactctgattcgaaaaggtctactaccactcaaaggtaacaat 4266137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 4266176 - 4266286
Alignment:
Q  277 tctatatatatgatcacgtttagggctgcatcagtcgcattgcaattatgtgcatcatcaaaatgacgacacaaccacaattattaatattgaaaacatg 376  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||   || ||  ||||||    
T  4266176 tctatatatgtgatcacgtttagggctgcatcagtcgcattgcgattatgtgcatcatcaaaatgacaacacaaccacaattat---tactgggaacatg 4266272  T
Q  377 atttaaaatcttga 390  Q
    ||||||||||||||    
T  4266273 atttaaaatcttga 4266286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 4266324 - 4266397
Alignment:
Q  426 aaagtttcaactattgagatacttttgcaattgcgatatgcagatgagagttatctaacaaatggatatttaga 499  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266324 aaagtttcaactattgacatacttttgcaattgcgatatgcagatgagagttatctaacaaatggatatttaga 4266397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 426 - 496
Target Start/End: Complemental strand, 4458569 - 4458499
Alignment:
Q  426 aaagtttcaactattgagatacttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||||||| | |||||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  4458569 aaagtttcaactattaacatacttttgcaattacaatatgcagaagagagttatttaacaaatggatattt 4458499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 4471113 - 4471047
Alignment:
Q  28 attgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttctcc 94  Q
    ||||||||||||| |||||  |||||||||||||||||| ||||||||||||| || ||||||||||    
T  4471113 attgttacatgccatttacagtagatgctgctgaagaacgtgcactcccaatcgttctcttttctcc 4471047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 4627364 - 4627193
Alignment:
Q  10 ttacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttctccatgcaatgcatctac 109  Q
    |||||||||| |||||  ||||||  ||| | ||||||||| | ||||||||||||||||||||||||||   | |||||||| | |  | ||||| | |    
T  4627364 ttacttgcttagtttcagattgtttaatgtcatttaccatacaagctgctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttc 4627265  T
Q  110 gttcttgtgtacttttcaattttctactctgattcgaaaaggtctactaccactcaaaggtaacaatatatg 181  Q
     ||||||| || ||| || |||  ||| ||| ||  |||||||||| |||||||||||||||||||| ||||    
T  4627264 tttcttgtctattttgcactttcgtacactgtttgaaaaaggtctaataccactcaaaggtaacaatttatg 4627193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 4259090 - 4259256
Alignment:
Q  10 ttacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttctccatgcaatgcatctac 109  Q
    |||||||||| |||||  ||||||||||| | ||||  ||| | ||||||||||| ||||||||||||||  ||||||| ||||||   | ||||  |||    
T  4259090 ttacttgcttagtttctgattgttacatgtcatttagtatacaagctgctgaagagcatgcactcccaattgttttcttctctccagctagtgcaagtac 4259189  T
Q  110 gttcttgtgtacttttcaattttctactctgattcgaaaaggtctactaccactcaaaggtaacaat 176  Q
     ||||||| |  ||| || |||  ||| ||| ||  |||||||||| ||||||||||||||||||||    
T  4259190 cttcttgtctgttttacactttcgtacactgtttgaaaaaggtctaataccactcaaaggtaacaat 4259256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 4506808 - 4506758
Alignment:
Q  446 acttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  4506808 acttttgtaattatgatatgcagatgagagttatctaacaaatggatattt 4506758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 4623521 - 4623443
Alignment:
Q  10 ttacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttctt 88  Q
    |||||||||| |||||| ||||||||||| | ||||| ||| | ||||||||||| ||||||||||||||  |||||||    
T  4623521 ttacttgcttagtttccgattgttacatgtcatttacaatacaagctgctgaagagcatgcactcccaattgttttctt 4623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 4255553 - 4255622
Alignment:
Q  10 ttacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaat 79  Q
    |||||||||| |||||  ||||||||||| | ||||||||| | ||||||||||| ||||||||||||||    
T  4255553 ttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaat 4255622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 4593171 - 4593135
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    |||||||||||||||||||||||||||||||||||||    
T  4593171 gatatgcagatgagagttatctaacaaatggatattt 4593135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 4482077 - 4482010
Alignment:
Q  12 acttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaat 79  Q
    |||||||| |||||  |||| |||||||| |||||  |||||||||| ||||||||||||||||||||    
T  4482077 acttgcttagtttctgattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaat 4482010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 4514301 - 4514352
Alignment:
Q  445 tacttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    |||||||||||||  |||||||||||||||||||| | ||||||||||||||    
T  4514301 tacttttgcaattatgatatgcagatgagagttatttgacaaatggatattt 4514352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 4575667 - 4575600
Alignment:
Q  12 acttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaat 79  Q
    |||||||| |||||  |||| |||||||| |||||  |||||||||||||||||||||| ||||||||    
T  4575667 acttgcttagtttctgattgctacatgccatttacagtagatgctgctgaagaacatgccctcccaat 4575600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 4489150 - 4489208
Alignment:
Q  49 tagatgctgctgaagaacatgcactcccaatccttttcttttctccatgcaatgcatct 107  Q
    |||||||||||||||||||||||||||||||  || ||||||| ||||| | |||||||    
T  4489150 tagatgctgctgaagaacatgcactcccaattgttctcttttccccatgtagtgcatct 4489208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 3173217 - 3173148
Alignment:
Q  10 ttacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaat 79  Q
    |||||||||| |||||| |||| || ||||| |||||  |||||| ||||||||||||||| ||||||||    
T  3173217 ttacttgctttgtttccgattgctatatgccatttacagtagatgttgctgaagaacatgctctcccaat 3173148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 4561874 - 4561809
Alignment:
Q  12 acttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactccca 77  Q
    |||||||| |||||  |||| |||||||| |||||  ||| |||||||||||||||||||||||||    
T  4561874 acttgcttagtttctgattgctacatgccatttacagtagctgctgctgaagaacatgcactccca 4561809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 4617962 - 4617930
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggat 492  Q
    |||||||||||||||||||||||||||||||||    
T  4617962 gatatgcagatgagagttatctaacaaatggat 4617930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 499
Target Start/End: Complemental strand, 4462060 - 4462021
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatatttaga 499  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  4462060 gatatgcagatgagatttatctaacagatggatatttaga 4462021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 4470754 - 4470704
Alignment:
Q  446 acttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    |||||| |||||  |||||||||||||||||||||||| | ||||||||||    
T  4470754 actttttcaattatgatatgcagatgagagttatctaatagatggatattt 4470704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 4489542 - 4489592
Alignment:
Q  446 acttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||    
T  4489542 acttttgaaattgtgatatgcagatgagagtaatctaacagatggaaattt 4489592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 4462424 - 4462343
Alignment:
Q  10 ttacttgcttggtttccaattgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttc 91  Q
    |||||||| | |||||  ||||||||||||| |||||  | ||||| |||||| ||| ||||||||||||| || |||||||    
T  4462424 ttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatcgttctcttttc 4462343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 496
Target Start/End: Complemental strand, 4481635 - 4481594
Alignment:
Q  455 attgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  4481635 attgtgatatgcagatgagagttatttaacagatggatattt 4481594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 3172678 - 3172642
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||||||||||||  |||||||||||||||    
T  3172678 gatatgcagatgagagttatgaaacaaatggatattt 3172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 4503652 - 4503700
Alignment:
Q  448 ttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||| | ||| |||||||||||||||||||| ||||| ||||    
T  4503652 ttttgcaattgtgttatacagatgagagttatctaacagatggaaattt 4503700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 4517258 - 4517222
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    |||||||||||||||||||| | ||||||||||||||    
T  4517258 gatatgcagatgagagttatttgacaaatggatattt 4517222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 4564651 - 4564615
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  4564651 gatatgcagatcagagctatctaacaaatggatattt 4564615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 4571909 - 4571873
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  4571909 gatatgcagatgagagttatctgacaaacggatattt 4571873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 4575257 - 4575209
Alignment:
Q  448 ttttgcaattgcgatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||  || |||||||||||||| |||||||||||| ||||||    
T  4575257 ttttgcaattatgacatgcagatgagagtgatctaacaaatgaatattt 4575209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 4602729 - 4602697
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggat 492  Q
    ||||||||||||| |||||||||||||||||||    
T  4602729 gatatgcagatgatagttatctaacaaatggat 4602697  T

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Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 24104311 - 24104143
Alignment:
Q  8 aattacttgcttggtttccaattgttacatgccttttacc----atagatgctgctgaagaacatgcactcccaatccttttcttttctccatgcaatgc 103  Q
    |||||||||||| |||||  ||||||||||||| |||||     || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  24104311 aattacttgcttagtttcggattgttacatgccatttacagttgatcgatgctgttgaagaacatgcactcccaattcttttcttttctccatgcaatgc 24104212  T
Q  104 atctacgttcttgtgtacttttcaattttctactctgattcgaaaaggtctactaccactcaaaggtaa 172  Q
    |||||| ||||||||||||||||||| | ||| |||||||| |||||||||| ||||||||||||||||    
T  24104211 atctaccttcttgtgtacttttcaatatcctaatctgattcaaaaaggtctagtaccactcaaaggtaa 24104143  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 24104085 - 24103988
Alignment:
Q  287 tgatcacgtttagggctgcatcagtcgcattgcaattatgtgcatcatcaaaatgacgacacaaccacaattattaatattgaaaacatgatttaaaatc 386  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||   ||||| |||||||||||||||||    
T  24104085 tgatcacacttagggctgcatcagtcgcatggcaattatgtgcatcattaaaatgacaacacaaccacaattat---tattggaaacatgatttaaaatc 24103989  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 24103973 - 24103900
Alignment:
Q  426 aaagtttcaactattgagatacttttgcaattgcgatatgcagatgagagttatctaacaaatggatatttaga 499  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  24103973 aaagtttcaactattgacatacttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttaga 24103900  T

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Target: scaffold0477 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 3454 - 3607
Alignment:
Q  28 attgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttca 127  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||||||  || |||||||  |  ||| ||||| | | ||||||| | |||| ||    
T  3454 attgttacatgccatttaccatacaagctgctgaagaacatgcactcccaattgttctcttttccaccggcagtgcatgttctttcttgtctgctttaca 3553  T
Q  128 attttctactctgattcgaaaaggtctactaccactcaaaggtaacaatatatg 181  Q
     |||| ||| ||| ||| |||||| ||| |||||||||||||||| ||| ||||    
T  3554 cttttgtacactgtttcaaaaaggactaataccactcaaaggtaaaaatttatg 3607  T

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Target: scaffold0288 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 2386 - 2441
Alignment:
Q  28 attgttacatgccttttaccatagatgctgctgaagaacatgcactcccaatcctt 83  Q
    ||||||||||| | ||||||||| | |||||||||||| |||||||||||||||||    
T  2386 attgttacatgtcatttaccatacaagctgctgaagaatatgcactcccaatcctt 2441  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 20863038 - 20863074
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||| |||||||||||||||||||||||||||||||    
T  20863038 gatatacagatgagagttatctaacaaatggatattt 20863074  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 1675167 - 1675131
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||||||||  |||||||||||||||||||    
T  1675167 gatatgcagatgagagacatctaacaaatggatattt 1675131  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 496
Target Start/End: Complemental strand, 1282050 - 1282018
Alignment:
Q  464 tgcagatgagagttatctaacaaatggatattt 496  Q
    |||||||||||||||||||||||||||||||||    
T  1282050 tgcagatgagagttatctaacaaatggatattt 1282018  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 3087937 - 3087878
Alignment:
Q  32 ttacatgccttttaccatagatgctgctgaagaacatgcactcccaatccttttcttttc 91  Q
    ||||||||| ||||||||| | | |||||||||  ||||||||||||||||| |||||||    
T  3087937 ttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttc 3087878  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 404 - 368
Alignment:
Q  460 gatatgcagatgagagttatctaacaaatggatattt 496  Q
    ||||||||||||||||  |||||||||||||||||||    
T  404 gatatgcagatgagagacatctaacaaatggatattt 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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