View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165-Insertion-6 (Length: 483)
Name: NF0165-Insertion-6
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 3283149 - 3283625
Alignment:
| Q |
7 |
atttagatgtgtgtattattatgcacattgggtccatcttgtatcttagcactgctgaatctatcccaaggaggaaccaactacaggaagaagtttgata |
106 |
Q |
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| T |
3283149 |
atttagatgtgtgtattattatgcacattgggtccatcttgtatcttagcactgctgaatctatcccaaggaggaaccaactacaggaagaagtttgata |
3283248 |
T |
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| Q |
107 |
tcatactatttaaaattatttgcatcacaccacttcttctaacccagtttttgtaagggtcgtgtagaaccagtggtgtgaaataattgatacttgtcta |
206 |
Q |
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| T |
3283249 |
tcatactatttaaaattatttgcatcacaccacttcttctaacccagtttttgtaagggtcgtgtagaaccagtggtgtgaaataattgatacttgtcta |
3283348 |
T |
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| Q |
207 |
ttatttatatttaagtgtctttcaaattttagaaacttcaagcaagttggtgattaacaaaatcccacttcaccaataggatatagcccatacaagacac |
306 |
Q |
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| T |
3283349 |
ttatttatatttaagtgtctttcaaattttagaaacttcaagcaagttggtgattaacaaaatcccacttcaccaataggatatagcccatacaagacac |
3283448 |
T |
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| Q |
307 |
gggctgcttaaagaaacaatgtattccttaaattattatggatagaaattcaattacttttcgaataactgttgtcattggtaaatgttacatacttttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283449 |
gggctgcttaaagaaacaatgtattccttaaattattatggatagaaattcaattacttttcgaataactgttgtcattggtaaatgttacatacttttt |
3283548 |
T |
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| Q |
407 |
gttatttaaactttttgtcaatattttagttatttgtctaagactcggttactattttaagagttgtgttatttgta |
483 |
Q |
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| T |
3283549 |
gttatttaaactttttgtcaatattttagctatttgtctaagactcggttactattttaagagttgtgttatttgta |
3283625 |
T |
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