View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165-Insertion-7 (Length: 417)
Name: NF0165-Insertion-7
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165-Insertion-7 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 8402666 - 8402244
Alignment:
| Q |
8 |
tgttctagctcataatatgatcttcatccatgttgttagaagttgaaaaaatagtatttccattgaaat--ggaaacatgacattgaaactcttttgaag |
105 |
Q |
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| T |
8402666 |
tgttctagctcataatatgatcttcatccatgttgtttgaagttgaaaaattagtatttccattgaaatatggaaacatgacattgaaactcttttaaag |
8402567 |
T |
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| Q |
106 |
ttcttaggatgttcttttctaaatctaacctgaaagacttata------tgctt-cctaattgttcgctatcatcccttcaagttgggactacgaaaaga |
198 |
Q |
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| T |
8402566 |
ttcttaggatgttcttttctaaatctaacttgaaaggcttataattatatgctttcctaactgttcgctatcatcccttcaagttgggactacgaaaaga |
8402467 |
T |
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| Q |
199 |
attaatattttgctaagaaattataagcaacataacaccctaagtcctaacatttcatcaaacactacatctcataataaccagcatgagctatcgacat |
298 |
Q |
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| T |
8402466 |
attaatattttgctaagaaattataagcaacataacaccttgagtcctaacatttcatcaaacactacatctcataataaccagcatgagctattgacat |
8402367 |
T |
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| Q |
299 |
tgttgagaattagaagtatggtagagtccaatgaagagaatagtagaatatactttatat----attctaccagaactaatataaccaattagcaactaa |
394 |
Q |
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| T |
8402366 |
tgttgagaattagaagtatggtagagtccaatgaagagaatagtagaatatactttatatagtcattctacgagaactaatataaccaattagcaactaa |
8402267 |
T |
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| Q |
395 |
ttataactaacggtcttcgtaag |
417 |
Q |
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| T |
8402266 |
ttataactaacggtctccgtaag |
8402244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 8444330 - 8444284
Alignment:
| Q |
301 |
ttgagaattagaagtatggtagagtccaatgaagagaatagtagaat |
347 |
Q |
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| T |
8444330 |
ttgagaattagaagtttggtagagtccaatgaagagaatagtagaat |
8444284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 65583 - 65629
Alignment:
| Q |
301 |
ttgagaattagaagtatggtagagtccaatgaagagaatagtagaat |
347 |
Q |
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| T |
65583 |
ttgagaattagaagtttggtagagtccaatgaagagaatagtagaat |
65629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 65686 - 65748
Alignment:
| Q |
345 |
aatatactttatata----ttctaccagaactaatataaccaattagcaactaattataacta |
403 |
Q |
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| T |
65686 |
aatatactttatatagtcattctacgataactaatataaccaattagcaaataattatgacta |
65748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 31842850 - 31842814
Alignment:
| Q |
369 |
aactaatataaccaattagcaactaattataactaac |
405 |
Q |
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| T |
31842850 |
aactaatataaccaaataacaactaattataactaac |
31842814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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