View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165-Insertion-8 (Length: 412)
Name: NF0165-Insertion-8
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 37603487 - 37603894
Alignment:
| Q |
8 |
agtcttactcatttggagataaaatttgatcaacaatgtgttcttatccttgagaatgattgattagattgcagatgtttggtcttgtggggtaacattg |
107 |
Q |
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| T |
37603487 |
agtcttactcatttcgagataaaatttgatcaacaatgtgttcttatccttgagaatgattgattagattgcagatgtttggtcttgtggggtaacattg |
37603586 |
T |
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| Q |
108 |
tatgttatgcttgttggtgcttatccttttgaagatccagaagacccgaaaaacttcnnnnnnncacttcaggttagttgaa-------------attac |
194 |
Q |
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| T |
37603587 |
tatgttatgcttgttggtgcttatccttttgaagatccagaagacccgaaaaacttcaaaaaaacacttcaggttagttgaagaattaaataattattac |
37603686 |
T |
|
| Q |
195 |
tagttaatgatttaattaatttgctatggtaccccttgtgtaacatacatacataaccaatacgtaatttattagtttctttttggacaattttgacagc |
294 |
Q |
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| T |
37603687 |
tagttaatgatttaattaatttgctatggtacccctagtgtaacat----acataaccaatacgtaatttattagtttctttttggacaattttgacagc |
37603782 |
T |
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| Q |
295 |
gaattcttagtgtccactattcaattccagactatgctcgcattactcaagagtgcagacatcttttatctcgaatatttgttgccaaccctgataaggt |
394 |
Q |
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| T |
37603783 |
gaattcttagtgtccactattcaattccagactatgttcgcattactcaagagtgcagacatcttttatctcgaatatttgttgccaaccctgataaggt |
37603882 |
T |
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| Q |
395 |
acaaacaatttt |
406 |
Q |
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| T |
37603883 |
acaaacaatttt |
37603894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 34127037 - 34126965
Alignment:
| Q |
73 |
agattgcagatgtttggtcttgtggggtaacattgtatgttatgcttgttggtgcttatccttttgaagatcc |
145 |
Q |
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| T |
34127037 |
agatcgcagatgtttggtcttgtggggtaaccttatatgtgatgctagtgggatcgtatccctttgaagatcc |
34126965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 34078475 - 34078550
Alignment:
| Q |
73 |
agattgcagatgtttggtcttgtggggtaacattgtatgttatgcttgttggtgcttatccttttgaagatccaga |
148 |
Q |
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| T |
34078475 |
agattgcagatgtttggtcttgtggggtgacattatatgtcatgttggtgggtgcttatccttttgaggatccaga |
34078550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 41126673 - 41126752
Alignment:
| Q |
72 |
tagattgcagatgtttggtcttgtggggtaacattgtatgttatgcttgttggtgcttatccttttgaagatccagaaga |
151 |
Q |
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| T |
41126673 |
tagattgcagatgtttggtcttgtggtgtgacactctatgtcatgctagttggtgcatatccatttgaagaaccagaaga |
41126752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 41120254 - 41120333
Alignment:
| Q |
72 |
tagattgcagatgtttggtcttgtggggtaacattgtatgttatgcttgttggtgcttatccttttgaagatccagaaga |
151 |
Q |
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| T |
41120254 |
tagattgcagatatgtggtcctgtggtgtgacactttatgttatgctagttggtgcatatccatttgaagaaccagaaga |
41120333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 395
Target Start/End: Original strand, 39412834 - 39412944
Alignment:
| Q |
285 |
ttttgacagcgaattcttagtgtccactattcaattccagactatgctcgcattactcaagagtgcagacatcttttatctcgaatatttgttgccaacc |
384 |
Q |
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||||||||| ||||||||| ||||||||||| ||||| ||||||| ||| || | |||| || ||||| |||||||||| ||||||||| ||||||| |
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| T |
39412834 |
ttttgacagagaattcttaaggtccactattctattccggactatgttcgtgtttccaaagattgtagacaccttttatctcaaatatttgtggccaacc |
39412933 |
T |
|
| Q |
385 |
ctgataaggta |
395 |
Q |
| |
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| T |
39412934 |
ctgaaaaggta |
39412944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 39412485 - 39412557
Alignment:
| Q |
76 |
ttgcagatgtttggtcttgtggggtaacattgtatgttatgcttgttggtgcttatccttttgaagatccaga |
148 |
Q |
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| T |
39412485 |
ttgctgatgtttggtcttgtggggttaccttgtatataatgctagttggtggttatccttttgaagatgcaga |
39412557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 27105017 - 27104947
Alignment:
| Q |
72 |
tagattgcagatgtttggtcttgtggggtaacattgtatgttatgcttgttggtgcttatccttttgaaga |
142 |
Q |
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| T |
27105017 |
tagattgcagatgtttggtcttgtggagtcaccttatatgtgatgttagtcggcgcttatccttttgaaga |
27104947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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