View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165-Insertion-9 (Length: 401)
Name: NF0165-Insertion-9
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 39852713 - 39852457
Alignment:
| Q |
8 |
gtacccagttgtggtaagattcaacaaagttaactatgcaaatgtatcaacaaacaactatgctttggatgagattgaggaagtcaaatgagtcatcatc |
107 |
Q |
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| T |
39852713 |
gtacccagttgtggtaagattcaacaaagttaactatgcaaatgtatcaacaaacaactatgctttggatgagattgaggaagtcaaatgagtcatcatc |
39852614 |
T |
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| Q |
108 |
atctatatactttaatttgtaatacaagttgctagcttaaggattttcatgtcataaagaagaatgaatgtgtatatcatattttgtgtgatgtctacca |
207 |
Q |
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| T |
39852613 |
atctatctactttaatttgtaattcaagttgctagcttaaggattttcatgtcataaagaagaatgaatgtgtatatcatattttgtgtgatgtctgcca |
39852514 |
T |
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| Q |
208 |
ttctacctcttgatgacacattatatacatgtgcagtagttcctcataaacagatag |
264 |
Q |
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| T |
39852513 |
ttctacctcttaatgacacattatatacatgtgcagtagttcctcataaacagatag |
39852457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 39852457 - 39852350
Alignment:
| Q |
294 |
gtttataatttaaatgaataattaagcgcgttactgctatcgatttaagggcagtaacttgcttattgcggnnnnnnnctgaagaatatgtttgatactc |
393 |
Q |
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| T |
39852457 |
gtttataatttaaatgaataattaagcacgttactgctatcgatttaatggcagtaacttgcttattgcggtttttttctgaagaatatgtttgatactc |
39852358 |
T |
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| Q |
394 |
atcataaa |
401 |
Q |
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|||||||| |
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| T |
39852357 |
atcataaa |
39852350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 29818151 - 29818209
Alignment:
| Q |
33 |
aaagttaactatgcaaatgtatcaacaaacaactatgctttggatgagattgaggaagt |
91 |
Q |
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||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
29818151 |
aaagtgaactacgccaatgtatcgacaaataactatgctttggatgagattgaagaagt |
29818209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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