View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0165_high_4 (Length: 383)
Name: NF0165_high_4
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 376
Target Start/End: Complemental strand, 47286417 - 47286066
Alignment:
| Q |
25 |
catcaaaatcaaattatttttatgtctatgcgaccgtaaaagatgaattatatcagatgtaaaaatgcaatatagtatcagaattcatagtaccttgtgg |
124 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47286417 |
catcaaaatcaaattatttttatgtctttgcgaccgtaaaagatgaattatatcagatgtaaaaatgcaatatagtatcagaattcacagtaccttgtgg |
47286318 |
T |
|
| Q |
125 |
atttggcctcggttcatctggagcaggcacattcaactcatgataaaatggatacaactcatacctaatattacaactaggaataagaactcttgctcct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286317 |
atttggcctcggttcatctggagcaggcacattcaactcatgataaaatggatacaactcatacctaatattacaactaggaataagaactcttgctcct |
47286218 |
T |
|
| Q |
225 |
tgttttccactacagcaagatggtaaataattagttgctattttgaggcatttttcgcatcctgaatttgacaaatccggtgtacactgtgcaagtgtat |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286217 |
tgttttccactacagcaagatggtatataattagttgctattttgaggcacttttcgcatcctgaatttgacaaatccggtgtacactgtgcaagtgtat |
47286118 |
T |
|
| Q |
325 |
acaatgtttgaaaactagaaaaatttgccacttttgttccaaacttcttgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286117 |
acaatgtttgaaaactagaaaaatttgccacttttgttccaaacttcttgtc |
47286066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 752 times since January 2019
Visitors: 2239