View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165_high_5 (Length: 274)
Name: NF0165_high_5
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33282422 - 33282647
Alignment:
| Q |
1 |
taacatgtttttgcaccctgtaatcatgacaagagaaaccatttgaaataatctctccaatctgaatacaaaagaaatcaaataaggagaaagggagcca |
100 |
Q |
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| T |
33282422 |
taacatgtttttgcaccctgtaatcatgacaagagaaaccatttgaaataatatctccaatctcaatacaaaagaaatcaaataaggagaaagggagcca |
33282521 |
T |
|
| Q |
101 |
cattttctca-----ggaaagtagtaaannnnnnnaagattttgccattccacaacatatggattttagaggaagaaatgcaaatgacatcaaccaactt |
195 |
Q |
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|||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33282522 |
cattttcttatactttcaaagtagtaaattcttttaagattttgccattccacaacatatggattttagaggaagaaatgcaaatgacatcaaccaactt |
33282621 |
T |
|
| Q |
196 |
ctggccggggaaacacaatgccataa |
221 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
33282622 |
ctggccggggaaacacgatgccataa |
33282647 |
T |
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