View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165_low_1 (Length: 543)
Name: NF0165_low_1
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 105 - 535
Target Start/End: Complemental strand, 6948585 - 6948153
Alignment:
| Q |
105 |
tcattgatccgagtaaaatttcgtctcaggtagtgactaattaccggcaaagtcggtgcacaactgttacaatacataaccaaaagattaagaaaaagac |
204 |
Q |
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| T |
6948585 |
tcattgatccgagtaaaattttgtctcaggtagtgactaattaccggcaaagtcggtgcacaactgttacaatacataaccaaaagattaagaaaaagac |
6948486 |
T |
|
| Q |
205 |
caaattaaagaaattgtaccatgagagttattggatgttgatggttggtcagtggttgtggctgtgcgttgctgtgagggtataacaacgccaggccagg |
304 |
Q |
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| T |
6948485 |
caaattaaagaaattgtaccatgagagttattggatgttgatggttggtcagtggttgtggctgtgcgttgctgtgagggtataacaacgccaggccagg |
6948386 |
T |
|
| Q |
305 |
agcggcacatacagtgcattccttcatcaatacttctgtagagggtggtcaagtgtttaccacatcctccccatgtatatttcccacaggtagcacattc |
404 |
Q |
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| T |
6948385 |
agcggcacatacagtgcattccttcatcaatacttctgtagagggtggtcaagtgtttaccacatcctccccatgtatatttcccacaggtagcacattc |
6948286 |
T |
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| Q |
405 |
caacctataacaca--nnnnnnnngcaacccctcaattcagaattgagtattgttgatgttgtttcactcgtagcaatacgatctaactatcttgatttt |
502 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6948285 |
caacctataacacattttttttttgcaacccctcaattcagaattgagtattgttgatgttgtttcactcgtagcaatacgatctaactatcttgatttt |
6948186 |
T |
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| Q |
503 |
atagttacggggtaaatattatattcctatgat |
535 |
Q |
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| T |
6948185 |
atagttaaggggtaaatattatattcctatgat |
6948153 |
T |
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