View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0165_low_2 (Length: 458)
Name: NF0165_low_2
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 449
Target Start/End: Original strand, 45792269 - 45792688
Alignment:
| Q |
30 |
tgtgtaactccattccatcctgtaaaaatttcatacaccagcagcaaaatagacgatcaaaagatggatgaaaaataaagaattggtagagagaacatga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
45792269 |
tgtgtaactccattccatcctgtaaaaaattcatacaccagcagcaaaatagacgatcaaaa----aatgaaaaatgaagaattggtagagagaacatga |
45792364 |
T |
|
| Q |
130 |
taatagagatggtcatggaggaaaagatgacgtagatgatatgattatttatttatctctaccatgttacggatctctttctaccgtattacagatctgg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792365 |
taatagagatggtcatggaggaaaagatgacgtagatgatatgattatttatttatctctaccatgttacggatctctttctaccgtattacagatctaa |
45792464 |
T |
|
| Q |
230 |
taatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattggggtcaaatctgtaatagatcatagatg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792465 |
taatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattggggtcaaatctgtaatagatcatagatg |
45792564 |
T |
|
| Q |
330 |
gcgttgaagagttatggagcaaaag------gtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggat |
423 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
45792565 |
gcgttgaagagttatggagcaaaaggtggatgtggatgtggatgaatggggaggagacagaccatgaacaattaatt--gagagagggcaaaataagaat |
45792662 |
T |
|
| Q |
424 |
tatagtgctaatcatgatagaataat |
449 |
Q |
| |
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|||| ||||||||||||||| ||||| |
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|
| T |
45792663 |
tataatgctaatcatgataggataat |
45792688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 449
Target Start/End: Original strand, 50004784 - 50004906
Alignment:
| Q |
325 |
agatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggatt |
424 |
Q |
| |
|
||||||||||||| |||||||| | || |||| || || |||| |||| ||| ||| ||| ||||| || ||||||| ||| || |||||||||||| |
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| T |
50004784 |
agatggcgttgaaaagttatgggggaagaggtagaggtcgatggatggagagaagagagaatgtgaacgatgaattgagtgag--ggtaaaataaggatt |
50004881 |
T |
|
| Q |
425 |
atagtgctaatcatgatagaataat |
449 |
Q |
| |
|
|||||||||||||||||| ||||| |
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| T |
50004882 |
ctagtgctaatcatgataggataat |
50004906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 449
Target Start/End: Complemental strand, 7670901 - 7670482
Alignment:
| Q |
30 |
tgtgtaactccattccatcctgtaaaaatttcatacaccagcagcaaaatagacgatcaaaagatggatgaaaaataaagaattggtagagagaacatga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
7670901 |
tgtgtaactccattccatcctgtaaaaattttatacaccaacagcaaaatagacgctcaatagatggatgaaaaatgaagaattggtagagagaacatga |
7670802 |
T |
|
| Q |
130 |
taatagagatggtcatggaggaaaagatgacgtagatgatatgattatttatttatctctaccatgttacggatctctttctaccgtattacagatctgg |
229 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
7670801 |
taatagagatggttatggaggaaaagatgacgtagatgatatgattatttatttatctctaccattttacggatctctttctaccgtattacagatatga |
7670702 |
T |
|
| Q |
230 |
taatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattggggtcaaatctgtaatagatcatagatg |
329 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
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|
| T |
7670701 |
taatttgttaccaattcacaataaacaaacaattatgcatgtgcatgaaaaagtgattgtatggtggaattggggtcaaatccgtaacatatcatagatg |
7670602 |
T |
|
| Q |
330 |
gcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggattatagt |
429 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
7670601 |
gcgttaaagagttatggagcaagaggtggatgtggatgaatggggaggagacaaaccatgaacaattaattgagagagagggcaaaataaggattataat |
7670502 |
T |
|
| Q |
430 |
gctaatcatgatagaataat |
449 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
7670501 |
gctaatcatgataggataat |
7670482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 449
Target Start/End: Complemental strand, 18665440 - 18665265
Alignment:
| Q |
274 |
aggaaaaagtgattgtatggtggaattggggtcaaatctgt----aatagatcatagatggcgttgaagagttatggagcaaaaggtggatgtggatgaa |
369 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | |||| | |||||| | |||||| ||||||||||||||||| || |||| | || || | |
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| T |
18665440 |
aggaaaaagtgattgtagggtagaattggggttagatctctgacaaataga--agagatggggttgaagagttatggagaaagaggtagtggtcaattga |
18665343 |
T |
|
| Q |
370 |
tggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
449 |
Q |
| |
|
||| ||| ||| ||| ||||||| || ||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
18665342 |
tggagagaagaaagaacatgaacgatgaattgagagag--ggcaaaataaggattttagtgctaatcatgataggataat |
18665265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 40029327 - 40029157
Alignment:
| Q |
30 |
tgtgtaactccattccatcctgtaaaaa-tttcatacaccagcagcaaaatagacgatcaaaagatggatgaaaaataaagaattggtagagagaacatg |
128 |
Q |
| |
|
||||||||| ||||||| | |||||||| ||||||||||||||| |||| || | ||||||||||||| |||||| || ||||||||||||||||||| |
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|
| T |
40029327 |
tgtgtaacttcattccaacgtgtaaaaaatttcatacaccagcaacaaattaaataatcaaaagatggaagaaaaaggaataattggtagagagaacatg |
40029228 |
T |
|
| Q |
129 |
ataatagagatggtcatggaggaaaa-gatgacgtagatgatatgattatttatttatctctaccatgtta |
198 |
Q |
| |
|
||||||||||| || ||||||||||| | ||| ||||| ||| |||| || |||| |||||||||||||| |
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|
| T |
40029227 |
ataatagagatagttatggaggaaaatgttgaggtagaggatctgatgatcgatttctctctaccatgtta |
40029157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 449
Target Start/End: Complemental strand, 40029143 - 40028927
Alignment:
| Q |
234 |
ttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtggaattggggtcaaatctgtaatagatcatagatggcgt |
333 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| | | ||| ||||||||||||||||| | |||||||||| ||| ||| |||| | ||||| ||||| | |
|
|
| T |
40029143 |
ttgttaccaattcacaacaaacaaacaattaagtatgtgtaggaaaaagtgattgtaggatggaattgggatcagatc-gtaacaaatcatggatggtat |
40029045 |
T |
|
| Q |
334 |
tgaagagttatggagcaaaaggtggatgtggatg--aatgg--ggaggagacagaccatgaacaattaattgagagagagggcaaaataaggattatagt |
429 |
Q |
| |
|
|||||||||| ||||||| |||| ||||| ||| ||||| |||| || | | ||||||||| |||| || ||||||||||||||| ||| ||| |
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|
| T |
40029044 |
tgaagagttacggagcaagaggtagatgtcaatgtcaatggatggagaggagatagtatgaacaatgaatt--gaaagagggcaaaataagaattctagc |
40028947 |
T |
|
| Q |
430 |
gctaatcatgatagaataat |
449 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
40028946 |
gctaatcatgataggataat |
40028927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 45980343 - 45980476
Alignment:
| Q |
325 |
agatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggatt |
424 |
Q |
| |
|
||||||||||||| ||||||| || || |||| || || |||| |||| ||| ||| ||| ||||| | || |||||| |||||||||||| |||| ||| |
|
|
| T |
45980343 |
agatggcgttgaatagttatgaaggaagaggtagaggtcgatggatggagagcagagagaacatgagcgatgaattgaaagagagggcaaattaagaatt |
45980442 |
T |
|
| Q |
425 |
atagtgctaatcatgatagaataa-tctacccac |
457 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| |
|
|
| T |
45980443 |
ttagtgctaatcatgataggataattctacccac |
45980476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 10026594 - 10026542
Alignment:
| Q |
397 |
aattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
449 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||||||||| |||| ||||| |
|
|
| T |
10026594 |
aattgagagaaagggcaaaataagaattctagtgctaatcataataggataat |
10026542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 39645061 - 39645009
Alignment:
| Q |
397 |
aattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
449 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
39645061 |
aattgaaagagagggcaaaataagaatttaagtgctaatcatgataggataat |
39645009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 424
Target Start/End: Complemental strand, 47038731 - 47038632
Alignment:
| Q |
325 |
agatggcgttgaagagttatggagcaaaaggtggatgtggatgaatggggaggagacagaccatgaacaattaattgagagagagggcaaaataaggatt |
424 |
Q |
| |
|
|||||| ||||||||||||||||| || |||| || || |||| |||| || ||| | | ||||||| || |||||||||| |||| |||||||||||| |
|
|
| T |
47038731 |
agatggtgttgaagagttatggaggaagaggttgaggtcgatggatggagatcagagaaaacatgaacgatgaattgagagaaagggtaaaataaggatt |
47038632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 449
Target Start/End: Original strand, 44763904 - 44764080
Alignment:
| Q |
277 |
aaaaagtgattgtatggtggaattggggtcaaatctgtaatagatc--atagatggcgttgaagagttatggagcaaaaggtggatgtggatgaatgggg |
374 |
Q |
| |
|
|||||||||||||| |||||||||||||| | || ||| ||| || | |||||| ||||||||||||||||| || |||| || || |||| |||| | |
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|
| T |
44763904 |
aaaaagtgattgtagggtggaattggggttagatttgtgataaatagaagagatggtgttgaagagttatggaggaagaggtagaggtcgatgcatggag |
44764003 |
T |
|
| Q |
375 |
ag--gagacagaccatgaacaattaattgagagagagggcaaaataaggattatagtgctaatcatgatagaataat |
449 |
Q |
| |
|
| |||| ||| ||||||| || ||| |||||| |||| |||||||| ||| || | ||||||||||||| ||||| |
|
|
| T |
44764004 |
atcagagagagaacatgaacgatgaatggagagaaagggtaaaataagaattttaatactaatcatgataggataat |
44764080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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