View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0165_low_3 (Length: 423)
Name: NF0165_low_3
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0165_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 11681253 - 11680861
Alignment:
| Q |
1 |
catctcgaataatatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
100 |
Q |
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||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11681253 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
11681154 |
T |
|
| Q |
101 |
tatcataagaaaaatcattccatttcgcgcctttcatatagccgcatgcgaaataagccaatagcctttttccaatttcttttaaggacaccatccaaca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11681153 |
tatcataa-aaaaatcattccatttcgcgcctttcatatagccgcatgccaaataagccaatagcctttttccaatttcttttaaggacaccatccaaca |
11681055 |
T |
|
| Q |
201 |
aatactcagtttgaatcaatgagttcagtggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11681054 |
aatactcagtttgaatcaatgagttcagtggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcag |
11680955 |
T |
|
| Q |
301 |
gaaaaggtgaagggcagtctcctctccattggttcaaaaaacacattcaactgcaacctcaagatcgaaacaaataaacgtttatccctgccat |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11680954 |
gaaaaggtgaagggcagtctcctctccattggttcaaaaaacacattcatctgcaacctcaagatcgaaacaaataaacgtttatccctgccat |
11680861 |
T |
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