View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0165_low_6 (Length: 275)
Name: NF0165_low_6
Description: NF0165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0165_low_6
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 33282446 - 33282179
Alignment:
Q
1
gattacagggtgcaaaaacatgttagactcgataagggaggaaaggaaatgagatttatcatttagtaaagaaatatctagagtttttccttttcataat
100
Q
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
T
33282446
gattacagggtgcaaaaacatgttagactccataagggaggaaaggaactgagatttatcatttagtaaagaaatatctagagtttttccttttcataat
33282347
T
Q
101
gttgcatgaacttta--------------ag---gcatagaaaaatgtcaacaatttaaggcatctccatcaggggacaccggaagcataactgggtctg
183
Q
||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
33282346
gttgcatgaactttatatggggcaacactagtgagcatagaaaa-tgtcaacaatttaaggcatctccatcagggaacaccggaagcataactgggtctg
33282248
T
Q
184
tctgcttaggcacctctaactcaatgtcgatgggtcatattttaccatcaatggaagctcgactgatga
252
Q
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
33282247
tctgcttaggcacctcgaactcaatgtcgatgggtcatattttaccatcaatggaagctcgactaatga
33282179
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 7701771 - 7701720
Alignment:
Q
191
aggcacctctaactcaatgtcgatgggtcatattttaccatcaatggaagct
242
Q
|||| |||| |||||||||||||||||||| |||||| || |||||||||||
T
7701771
aggcgcctcaaactcaatgtcgatgggtcacattttatcagcaatggaagct
7701720
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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