View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0166-INSERTION-1 (Length: 623)
Name: NF0166-INSERTION-1
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166-INSERTION-1 |
 | |
|
| [»] scaffold0572 (2 HSPs) |
| | |
|
| [»] scaffold0308 (2 HSPs) |
| | |
|
| [»] scaffold0429 (1 HSPs) |
| | |
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| [»] scaffold0051 (1 HSPs) |
| | |
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| [»] scaffold0177 (2 HSPs) |
| | |
|
| [»] scaffold0086 (2 HSPs) |
| | |
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| [»] scaffold0014 (2 HSPs) |
| | |
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| [»] scaffold0652 (2 HSPs) |
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| [»] scaffold0654 (1 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 614
Target Start/End: Original strand, 41198760 - 41199376
Alignment:
| Q |
9 |
aacctaccgatataatcagttgcaattccttattacatgctttatgtaaaaaccaacatgttgacaaggtgcactggtcaagagatttaaagaccaaggc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
41198760 |
aacctaccgatataatcagttgcaattccttattacatgctttatgtaaaaaccatcatgttgacaaggtgcactggtcaagaaatttaaagaccaagac |
41198859 |
T |
|
| Q |
109 |
attcaactatattaattcatggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198860 |
attcaactatattaattcatggactatgcaaataaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaa |
41198959 |
T |
|
| Q |
209 |
tagtcttaacatataatattatgatcaacggtctttgtttagagggcttgtttgatgaaatcgctatnnnnnnnntaaaagacaatggttgcattcctaa |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
41198960 |
tagtctgaacatataatattatgatcaacggtctttgtttagagggcttgtttgatgaaatcgctat-aaaaaattaaaagacaatggctgcattcctaa |
41199058 |
T |
|
| Q |
309 |
tgctatattttatcaaacatttattcacgctctatttgagaatgctatagcaaagaaacttctac-----atgaaatgattgctagagatttaccataag |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41199059 |
tgctatattttatcaaacatttattcacgctctatttgagaatgctataggaaagaaacttctacatgaaatgaaatgattgctagagatttaccataag |
41199158 |
T |
|
| Q |
404 |
agaagaaccaatttgagctaaagttttcgttggtaccaatgcagga------atacatggattttgtattttgagcatatgatactcctnnnnnnnngca |
497 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41199159 |
agaagaaccaatttgagctaaaatttccgttggtaccaatgcaggaatagacatacatggattttgtattttgagcatatgatactcctaaaaaaaagca |
41199258 |
T |
|
| Q |
498 |
tatgatactcctcaatcctcattcagct-agtacttagcatcgccaaattcnnnnnnnnnnnnccataaatttttagcttatcatgtaagaaatcatgaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41199259 |
tatgatactcctcaatcctcattcagctaagtacttagcatcgccaaattctttttgttttttccataaatttttagcttatcaggtaagaaatcatgaa |
41199358 |
T |
|
| Q |
597 |
tactatattgattatatt |
614 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41199359 |
tactatattgattatatt |
41199376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 17251557 - 17251609
Alignment:
| Q |
215 |
taacatataatattatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
||||||||| |||||||||||| || |||||| |||| |||||||||||||| |
|
|
| T |
17251557 |
taacatatagtattatgatcaatgggctttgtaaagagagcttgtttgatgaa |
17251609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 33322550 - 33322701
Alignment:
| Q |
54 |
gtaaaaaccaacatgttgacaaggtgcactggtcaagagatttaaagaccaaggcattcaactatattaattcatggactatgcaaacaaggaagactta |
153 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
33322550 |
gtaaaaaccatcatgttgacaaggtaaattggtcaagaaatttaaagatcaaggcattcaattatattaattcatggactatgcaaacaaggaagactta |
33322649 |
T |
|
| Q |
154 |
agaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaat |
205 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
33322650 |
cgaatggacatcaaatttctaaggatcttctgattaaaggattcaatgtaat |
33322701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 15062554 - 15062525
Alignment:
| Q |
286 |
aaagacaatggttgcattcctaatgctata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15062554 |
aaagacaatggttgcattcctaatgctata |
15062525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 16702123 - 16702025
Alignment:
| Q |
21 |
taatcagttgcaattccttattacatgctttatgtaaaaaccaacatgttgacaagg----tgcactggtcaagagatttaaagaccaaggcattcaac |
115 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
16702123 |
taatcacttacaattccttattacatgctttatgtaaaaaccatcatgttgacaaggcaattgcattggtcaacaattttaaagaccaaggcattcaac |
16702025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 16701994 - 16701858
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| | | || | |||| ||| ||||||||||||||||| | |||| ||| | || |||||||||| |
|
|
| T |
16701994 |
atggactatgcaaacaaggaagacttaaggacgcgcaactgatttttcaagatcttttgattaaaggctacaat----ttaccaacctggacatataata |
16701899 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
16701898 |
ttatgatcaatggtctttgtttagagggcttgcttgatgaa |
16701858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 15727028 - 15726892
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||||||||||||| | ||| |||| || | ||||||| || |
|
|
| T |
15727028 |
atggactatgcaaacaaggaagacttaaggatgcacaagtgatttttcaagatcttttgattaaaggctataat----ttaaatgtttgcacatatagta |
15726933 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| ||||||||| |
|
|
| T |
15726932 |
ttatgatcaatggtctttgttcaaagggcttatttgatgaa |
15726892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 16701765 - 16701660
Alignment:
| Q |
345 |
tgagaatgctatagcaaagaaacttctacatgaaatgattgctagagatttaccataagagaagaaccaatttgagctaaagttttcgttggtaccaatg |
444 |
Q |
| |
|
|||||||| || |||| |||||||| ||| |||| |||||| ||||| ||||| ||||| || ||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
16701765 |
tgagaatgataaagcagagaaacttgtacgtgaattgattgttagaggtttactttaagaaaa-aaccaatttgagctaaagtttccattggttccaatt |
16701667 |
T |
|
| Q |
445 |
caggaat |
451 |
Q |
| |
|
||||||| |
|
|
| T |
16701666 |
caggaat |
16701660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 15714737 - 15714695
Alignment:
| Q |
225 |
tattatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
15714737 |
tattatgatcaatggtctttgtttagagggcttatttgatgaa |
15714695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 3393 - 3529
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||| |||| ||||||||||||||||||||| | |||| |||| ||||| ||||||| || |
|
|
| T |
3393 |
atggactatgcaaacaaggaaggcttaaggatgcacaagtgatttttcaggatcttttgattaaaggctacaat----ttaacagtctggacatatacta |
3488 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
3489 |
ttatgatcaatggtctttgtttagagggtttgcttaatgaa |
3529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 3260 - 3364
Alignment:
| Q |
17 |
gatataatcagttgcaattccttattacatgctttatgtaaaaaccaacatgttgacaagg----tgcactggtcaagagatttaaagaccaaggcattc |
112 |
Q |
| |
|
|||||||||| || |||||| ||| || |||||||||| |||||||| ||||||||||||| |||| | ||||||| | |||||||||||||||||| |
|
|
| T |
3260 |
gatataatcacttacaattcattaatagatgctttatgcaaaaaccatcatgttgacaaggctattgcattagtcaagaaaattaaagaccaaggcattc |
3359 |
T |
|
| Q |
113 |
aacta |
117 |
Q |
| |
|
||||| |
|
|
| T |
3360 |
aacta |
3364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 9155 - 9291
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||| |||| ||| |||||||| |||||||| | |||| |||| ||| | |||||||||| |
|
|
| T |
9155 |
atggactatgcaaacaaggaagacttaaggacgcacaagtgatttttcaagatcttttcattaaaggctacaat----ttaacagtatggacatataata |
9250 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9251 |
ttatgatcaatggtctttgtttagagggcttgcttgatgaa |
9291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 1 - 129
Alignment:
| Q |
135 |
tgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataatattatgatc |
234 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| |||| ||||||||||||||||||||| | |||| |||| ||||| ||||||| |||||||||| |
|
|
| T |
1 |
tgcaaacaaggaaggcttaaggatgcacaagtgatttttcaggatcttttgattaaaggctacaat----ttaacagtctggacatatactattatgatc |
96 |
T |
|
| Q |
235 |
aacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|| |||||||| |||||||| ||| || ||||| |
|
|
| T |
97 |
aaaggtctttgattagagggtttgcttaatgaa |
129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 6356 - 6492
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||| |||| ||||||||||||||||||||| | |||| |||| ||||| ||||||| || |
|
|
| T |
6356 |
atggactatgcaaacaaggaaggcttaaggatgcacaagtgatttttcaggatcttttgattaaaggctacaat----ttaacagtctggacatatacta |
6451 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| || ||||| |
|
|
| T |
6452 |
ttatgatcaaaggtctttgattagagggtttgcttaatgaa |
6492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 43157 - 43021
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||| ||| |||| ||||||||||||||||||||| | |||| |||| ||||| ||||||| || |
|
|
| T |
43157 |
atggactatgcaagcaaggaaggcttaaggatgcacaagtgatttttcaggatcttttgattaaaggctacaat----ttaacagtctggacatatacta |
43062 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| | |||||| |
|
|
| T |
43061 |
ttatgatcaatggtctttgtttagagggtttgctcgatgaa |
43021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 27513 - 27649
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| ||| |||| ||||||||||||||||||||| | || |||| ||||| |||||||||| |
|
|
| T |
27513 |
atggactatgcaaagaaggaagatttgagaatgcacaagtgatttttcaggatcttttgattaaaggctataaggtaac----agtctggacatataata |
27608 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
||||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
27609 |
ttatgattaatggtctttgtttggagggattgtttgatgaa |
27649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 27398 - 27482
Alignment:
| Q |
35 |
tccttattacatgctttatgtaaaaaccaacatgttgacaagg----tgcactggtcaagagatttaaagaccaaggcattcaac |
115 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||||||||| |||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
27398 |
tccttcttgcatgctttatgtaaaaaccaccaagttgacaaggcagttgcattggtcaagaaaattaaagaccaaggcattcaac |
27482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 31269 - 31189
Alignment:
| Q |
34 |
ttccttattacatgctttatgtaaaaaccaacatgttgacaaggtgcactggtcaagagatttaaagaccaaggcattcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||| | || |||| |||||||||||||| |
|
|
| T |
31269 |
ttccttattacatgctttatgtaaaaaccatcatgttgacaagg-ccattggtcaacaatttaaaagtccaaggcattcaac |
31189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 31158 - 31022
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
||||| ||||||||||| |||| |||||| | | ||| | |||| |||||||||||||| |||||| | |||||||| | || |||||||||| |
|
|
| T |
31158 |
atggattatgcaaacaaagaaggcttaaggacgcacaactgatttttcaggatcttttgactaaaggctacaatgtaacaac----ctggacatataata |
31063 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
31062 |
ttattatcaatggtctttgtttagagggcttatttgatgaa |
31022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 121319 - 121183
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtcttaacatataata |
226 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||| |||| ||||||||||||||||||||| | || | ||| ||| | |||||||||| |
|
|
| T |
121319 |
atggactatgcaaagaaggaagacttgagaatgcacaagtgatttttcaggatcttttgattaaaggctataagg----taaaagtttggacatataata |
121224 |
T |
|
| Q |
227 |
ttatgatcaacggtctttgtttagagggcttgtttgatgaa |
267 |
Q |
| |
|
|||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
121223 |
ctatgattaatggtctttgtttggagggactgtttgatgaa |
121183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 121438 - 121350
Alignment:
| Q |
31 |
caattccttattacatgctttatgtaaaaaccaacatgttgacaagg----tgcactggtcaagagatttaaagaccaaggcattcaac |
115 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || || |||||||||| |||| ||||||||| | ||||||| || |||||||||| |
|
|
| T |
121438 |
caattccttattgcatgctttatgcaaaaatcatcaagttgacaaggcaattgcattggtcaagaaaattaaagatcagggcattcaac |
121350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 38144542 - 38144483
Alignment:
| Q |
144 |
ggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgta |
203 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
38144542 |
ggaagacttaaggatgcacaacaaatttttaaggatcttttgattaaaggatacaatgta |
38144483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 1134 - 1068
Alignment:
| Q |
127 |
atggactatgcaaacaaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaagg |
193 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
1134 |
atggactatgcaaagaaggaagacttgagaatgcacaagtgatttttcaggatcttttgattaaagg |
1068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 1275 - 1165
Alignment:
| Q |
9 |
aacctaccgatataatcagttgcaattccttattacatgctttatgtaaaaaccaacatgttgacaagg----tgcactggtcaagagatttaaagacca |
104 |
Q |
| |
|
||||| ||||| | |||| || ||||||||| ||||| |||||||||||||| || || |||||||||| |||| ||||||||| | ||||||| || |
|
|
| T |
1275 |
aacctgccgatgtgatcacttacaattccttcttacacgctttatgtaaaaatcatcaagttgacaaggcaattgcattggtcaagaaaattaaagatca |
1176 |
T |
|
| Q |
105 |
aggcattcaac |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
1175 |
gggcattcaac |
1165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 1178 - 1090
Alignment:
| Q |
31 |
caattccttattacatgctttatgtaaaaaccaacatgttgacaagg----tgcactggtcaagagatttaaagaccaaggcattcaac |
115 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || |||||||||| |||| | ||||||| | ||||||| || |||||||||| |
|
|
| T |
1178 |
caattccttcttacacgctttatgtaaaaaccatcaagttgacaaggcaattgcatttgtcaagaaaattaaagatcatggcattcaac |
1090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 391
Target Start/End: Complemental strand, 123867 - 123833
Alignment:
| Q |
357 |
agcaaagaaacttctacatgaaatgattgctagag |
391 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
123867 |
agcagagaaacttctacatgaaatgattgctagag |
123833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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