View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0166-INSERTION-3 (Length: 718)
Name: NF0166-INSERTION-3
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166-INSERTION-3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 64 - 319
Target Start/End: Complemental strand, 42994870 - 42994617
Alignment:
| Q |
64 |
taaataagggttaaataagttttttgttcttaaaaatataaagaatttttattttggcccttataaacaaaaatgggatgttttcggcctcaaaattaca |
163 |
Q |
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| T |
42994870 |
taaataagggttaaataagttttttgttcttaaaaatataaagaatttttatttcggcccttataaataaaaatgggatgttttcgctctcaaaattaca |
42994771 |
T |
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| Q |
164 |
catatcgttttttaacttaatttcatataacactgtggttannnnnnnnnnnnnnnataagatgttgaatttacaaaatctcacat-ttcacgcattcct |
262 |
Q |
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| T |
42994770 |
caaatcgtcttttaacttaatttcatataacactttcgtaatatatatatattt---tatgatgttgaatttacaaaatctcacatattcacgcgtttct |
42994674 |
T |
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| Q |
263 |
aattcctatcctttcgcacccgcatcactaataagtatttgggttcacattataaag |
319 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42994673 |
aattcctatcctttcgcacccgcatcactaatacgtatttgggttcacattataaag |
42994617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 559 - 718
Target Start/End: Complemental strand, 42991666 - 42991507
Alignment:
| Q |
559 |
ccttgaacgcctacactcagcagggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatct |
658 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42991666 |
ccttgaacgcctacactcagcagg-aataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatct |
42991568 |
T |
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| Q |
659 |
tcttctaccataagcatcaggctcg-tgctctgcaatgcagaatcagagaaggaagtggaa |
718 |
Q |
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| T |
42991567 |
tcttctaccataagcatcaagctcgttgctctgcaatgcagaatcagagaaggaagtggaa |
42991507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 337 - 496
Target Start/End: Complemental strand, 42993741 - 42993585
Alignment:
| Q |
337 |
tatatatagtgttctcgatagattgagaactggcaaggaagtggtacaaagaatttgatttatttcatcatctgttatataaaacagacgccnnnnnnnt |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
42993741 |
tatatatagtgttctcgatagattgagaactggcaaggaagtggtacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaat |
42993642 |
T |
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| Q |
437 |
acagaggaagatagtaaatcaaagaatcataataataaattaaaacaacggcaaacaaat |
496 |
Q |
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| T |
42993641 |
acagaggaagatagtaaatcaaagaatc---ataataaattaaaacaacaacaaacaaat |
42993585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 569 - 682
Target Start/End: Complemental strand, 35018349 - 35018237
Alignment:
| Q |
569 |
ctacactcagcagggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatcttcttctacca |
668 |
Q |
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||||||||| |||| || ||||||||| |||||||||||||| || || || ||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35018349 |
ctacactcaacagg-aacaccttgtgggaatcgcttaagatcattacaatagttataaatcatgaaatacttttgaacccatctcaatcttcttctacca |
35018251 |
T |
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| Q |
669 |
taagcatcaggctc |
682 |
Q |
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||||||||| |||| |
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| T |
35018250 |
taagcatcaagctc |
35018237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 521 - 718
Target Start/End: Original strand, 38213792 - 38213996
Alignment:
| Q |
521 |
taagatggctattatacgttcttcatcat------ctc-tcagaaccttgaacgcctacactcagcagggaataccttgtggaaatcgcttaagatcgtt |
613 |
Q |
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|||||||||||||||| |||||||||||| ||| ||||||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
38213792 |
taagatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcagg-aataccttctgggaatcgcttaagatcgtt |
38213890 |
T |
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| Q |
614 |
gcagtaattatatatcatgaaatacttctgaacccatctcaatcttcttctaccataagcatcaggctc-gtgctctgcaatgcagaatcagagaaggaa |
712 |
Q |
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|||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
38213891 |
gcagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaa |
38213990 |
T |
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| Q |
713 |
gtggaa |
718 |
Q |
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|||||| |
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| T |
38213991 |
gtggaa |
38213996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 521 - 718
Target Start/End: Original strand, 38218011 - 38218215
Alignment:
| Q |
521 |
taagatggctattatacgttcttcatcat------ctc-tcagaaccttgaacgcctacactcagcagggaataccttgtggaaatcgcttaagatcgtt |
613 |
Q |
| |
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|||||||||||||||| |||||||||||| ||| ||||||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
38218011 |
taagatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcagg-aataccttctgggaatcgcttaagatcgtt |
38218109 |
T |
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| Q |
614 |
gcagtaattatatatcatgaaatacttctgaacccatctcaatcttcttctaccataagcatcaggctc-gtgctctgcaatgcagaatcagagaaggaa |
712 |
Q |
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|||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
38218110 |
gcagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaa |
38218209 |
T |
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| Q |
713 |
gtggaa |
718 |
Q |
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|||||| |
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| T |
38218210 |
gtggaa |
38218215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 468
Target Start/End: Original strand, 38217886 - 38218000
Alignment:
| Q |
354 |
atagattgagaactggcaaggaagtggtacaaagaatttgatttatttcatcatctgttatataaaacagacgccnnnnnnntacagaggaagatagtaa |
453 |
Q |
| |
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||||||||| || || ||||||||||||||||||||||||||||||| ||||| || ||| ||||| |||| || || ||||||| ||| || |
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| T |
38217886 |
atagattgaaaagtgataaggaagtggtacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaa |
38217985 |
T |
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| Q |
454 |
atcaaagaatcataa |
468 |
Q |
| |
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||||||||||||||| |
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| T |
38217986 |
atcaaagaatcataa |
38218000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 54394303 - 54394354
Alignment:
| Q |
67 |
ataagggttaaataagttttttgttcttaaaaatataaagaatttttatttt |
118 |
Q |
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||||||||||||||||||||| ||||||| || ||||||||||||| ||||| |
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| T |
54394303 |
ataagggttaaataagtttttcgttcttataactataaagaattttgatttt |
54394354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 10439891 - 10439856
Alignment:
| Q |
68 |
taagggttaaataagttttttgttcttaaaaatata |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
10439891 |
taagggttaaataagttttttgttgttaaaaatata |
10439856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 4096483 - 4096529
Alignment:
| Q |
72 |
ggttaaataagttttttgttcttaaaaatataaagaatttttatttt |
118 |
Q |
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| T |
4096483 |
ggttaaataagttttttgttcctataaatataacgaattttaatttt |
4096529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 17174434 - 17174476
Alignment:
| Q |
155 |
aaaattacacatatcgttttttaacttaatttcatataacact |
197 |
Q |
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|||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
17174434 |
aaaattacacatttcgttatttaacttaatttcagataacact |
17174476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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