View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0166-INSERTION-9 (Length: 728)

Name: NF0166-INSERTION-9
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0166-INSERTION-9
NF0166-INSERTION-9
[»] chr5 (16 HSPs)
chr5 (33-470)||(42840206-42840643)
chr5 (408-728)||(42840633-42840953)
chr5 (289-454)||(24655467-24655632)
chr5 (295-454)||(29416755-29416914)
chr5 (536-620)||(21699390-21699474)
chr5 (517-620)||(42729895-42729998)
chr5 (213-408)||(39724444-39724639)
chr5 (322-470)||(41996205-41996353)
chr5 (511-560)||(41996385-41996434)
chr5 (295-408)||(16486712-16486825)
chr5 (511-622)||(42411627-42411738)
chr5 (511-569)||(37408516-37408574)
chr5 (511-622)||(42414567-42414678)
chr5 (295-413)||(28019144-28019262)
chr5 (318-408)||(42413994-42414084)
chr5 (591-620)||(41996504-41996533)
[»] scaffold0068 (1 HSPs)
scaffold0068 (536-620)||(14436-14520)
[»] chr8 (1 HSPs)
chr8 (287-418)||(15631811-15631940)
[»] chr3 (1 HSPs)
chr3 (286-406)||(2703723-2703843)
[»] chr2 (1 HSPs)
chr2 (286-392)||(27716942-27717048)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 33 - 470
Target Start/End: Original strand, 42840206 - 42840643
Alignment:
Q  33 acaaagcacaaaaatgatatgggcatttgaatatccactttgtgtccaaggcaaaattaaataaccataatcatatagctcatgggtcaaaagtcaaaac 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42840206 acaaagcacaaaaatgatatgggcatttgaatatccactttgtgtccaaggcaaaattaaataaccataatcatatagctcatgggtcaaaagtcaaaac 42840305  T
Q  133 aaagaagaaaatttactatatattcctgcaattggaagaaggctttccttctggaaaaatatcttgcaatgaaatttcgctataacaccaatttcttcaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42840306 aaagaagaaaatttactatatattcctgcaattggaagaaggctttccttctggaaaaatatcttacaatgaaatttcgctataacaccaatttcttcaa 42840405  T
Q  233 tcattccggtacttaaatcaaaccaagctagttcattgtcnnnnnnnataatcaatatattgcccttcttccctgctccaattggatactcaaggtaagg 332  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42840406 tcattccggtacttaaatcaaaccaagctagttcattgtctttttttataatcaatatattgcccttcttccctgctccaattggatactcaaggcaagg 42840505  T
Q  333 taagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgtagttgtctctttatagtttgctata 432  Q
    ||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42840506 taagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtagttgtctctttatagtttgctata 42840605  T
Q  433 aaagcaatggatccatttaataccaccaattttctctt 470  Q
    ||||||| |||||||||||||||||||| || ||||||    
T  42840606 aaagcaacggatccatttaataccaccagttgtctctt 42840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 408 - 728
Target Start/End: Original strand, 42840633 - 42840953
Alignment:
Q  408 agttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattttctcttcttgttataattaaaatcaaaatcaaaagtatctcct 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42840633 agttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattgtctcttcttgttataattaaaatcaaaatcaaaagtatctcct 42840732  T
Q  508 tcataagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactc 607  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42840733 tcaaaagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacattc 42840832  T
Q  608 catccatgtacacttcttcgctgcatttgtctgaatgatgcataccgcaatcaattttcctccaagagttgttgtttaggctataaatctcccagaagga 707  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42840833 catccatgtacacttcttcaccgcatttgtctgaatgatgcataccgcaatcaattttcctccaagagttgttgtttaggctataaatctccgagaagga 42840932  T
Q  708 agaaaactgtagaccaaaacg 728  Q
    |||||||||||||||||||||    
T  42840933 agaaaactgtagaccaaaacg 42840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 454
Target Start/End: Complemental strand, 24655632 - 24655467
Alignment:
Q  289 atattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcaccca 388  Q
    |||| ||||||||| || ||||| || |||||||||||| |||| ||||| || |||||||||| ||||||||||||       ||||| ||||| ||||    
T  24655632 atatcgcccttctttccagctccgataggatactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctccca 24655533  T
Q  389 aaattgaaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaata 454  Q
    |||||||||| |||||||||  ||||||||||||  || |||| |||||||| || || |||||||    
T  24655532 aaattgaaatgtgaaatgtacctgtctctttataacttactatgaaagcaatagacccgtttaata 24655467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 295 - 454
Target Start/End: Original strand, 29416755 - 29416914
Alignment:
Q  295 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 394  Q
    |||||||| |||||||| || ||| |||||||| |||| ||||| || |||||||||| ||||||||||||       ||||| ||||| ||||||||||    
T  29416755 cccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattg 29416854  T
Q  395 aaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaata 454  Q
    |||| |||||||||  ||||||| ||||  ||  ||| |||||||| || ||||||||||    
T  29416855 aaatgtgaaatgtacctgtctctatataacttattatgaaagcaatagacccatttaata 29416914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 620
Target Start/End: Complemental strand, 21699474 - 21699390
Alignment:
Q  536 aagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgtacac 620  Q
    ||||||||||||||||||||||||| |||||||||| ||||| | ||  | || ||||||||||| |||||||||||||||||||    
T  21699474 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccatccatgtacac 21699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 620
Target Start/End: Complemental strand, 42729998 - 42729895
Alignment:
Q  517 ggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgt 616  Q
    |||||| ||||||||||  ||||||||||| ||||||||||||| |||||||||| ||||| | ||  | || ||||||||| | |||||||||||||||    
T  42729998 ggtatgagtgttgtaatgcaagattcattgttgaagtcaaatgacaccaaatatgcatgtgcttctattttagcccaccaattacacactccatccatgt 42729899  T
Q  617 acac 620  Q
    ||||    
T  42729898 acac 42729895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 213 - 408
Target Start/End: Original strand, 39724444 - 39724639
Alignment:
Q  213 tataacaccaatttcttcaatcattccggtacttaaatcaaaccaagctagttcattgtcnnnnnnnataatcaatatattgcccttcttccctgctcca 312  Q
    |||||||||||| || ||||||||  || |||||| ||||||||| |||||||||  |||        ||| |||||| ||||||||||| || |||||     
T  39724444 tataacaccaatctcctcaatcatctcgttacttacatcaaaccaggctagttcaccgtctcttttcctaaacaatatcttgcccttcttacccgctccg 39724543  T
Q  313 attggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgta 408  Q
    |||||||| |||||| ||||||| || |||||||| ||||  |||||||||||       | ||| ||||| ||||||||||| || |||||||||    
T  39724544 attggataatcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaatgta 39724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 322 - 470
Target Start/End: Original strand, 41996205 - 41996353
Alignment:
Q  322 tcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgtagttgtctctttat 421  Q
    ||||||||| |||| || |||||||| |||| ||||||||||||       ||| ||||||||||||||||| |||| |||||||||| |||||   |||    
T  41996205 tcaaggtaatgtaaaggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgtagatgtcttggtat 41996304  T
Q  422 agtttgctataaaagcaatggatccatttaataccaccaattttctctt 470  Q
      |||   ||||||||||| |||||||||||||||| ||| | ||||||    
T  41996305 gatttaacataaaagcaatagatccatttaataccatcaaatgtctctt 41996353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 41996385 - 41996434
Alignment:
Q  511 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatga 560  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  41996385 taagagggtatgggtgttgtaatgaaagattcattgctgaagtcaaatga 41996434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 408
Target Start/End: Original strand, 16486712 - 16486825
Alignment:
Q  295 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 394  Q
    |||||||| || |||||||| ||||||||||| ||||||||||| || | ||| |||| |||| |||||||       ||||||| |||||| |||||||    
T  16486712 cccttctttccggctccaataggatactcaagataaggtaagggccctaaaatgaagatcttaatccatgatttctttacaccaaattcacctaaaattg 16486811  T
Q  395 aaatttgaaatgta 408  Q
    |||| |||||||||    
T  16486812 aaatgtgaaatgta 16486825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 511 - 622
Target Start/End: Complemental strand, 42411738 - 42411627
Alignment:
Q  511 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatccca-ccaatgagacactcca 609  Q
    ||||| |||||||||  | ||||  |||||||| ||||||||||||| || |||||||||||| ||||| || || |  |||| ||||||||||||||||    
T  42411738 taagagggtatgggtaatttaatgcaagattcactgctgaagtcaaacgacaccaaatatgtacgtgtt-ctactttcacccaaccaatgagacactcca 42411640  T
Q  610 tccatgtacactt 622  Q
    |||||||||||||    
T  42411639 tccatgtacactt 42411627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 569
Target Start/End: Original strand, 37408516 - 37408574
Alignment:
Q  511 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaata 569  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||    
T  37408516 taagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 37408574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 622
Target Start/End: Complemental strand, 42414678 - 42414567
Alignment:
Q  511 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctat-atcccaccaatgagacactcca 609  Q
    ||||| |||||||||||| ||||  |||||||| |||||||||||||||| ||||||  || |||| || || || | | |  |||||||||||||||||    
T  42414678 taagagggtatgggtgttataatgcaagattcactgctgaagtcaaatgacaccaaacttggatgt-tttctactttcacctaaccaatgagacactcca 42414580  T
Q  610 tccatgtacactt 622  Q
    |||||||||||||    
T  42414579 tccatgtacactt 42414567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 28019262 - 28019144
Alignment:
Q  295 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 394  Q
    |||||||| || ||||| ||||||| ||||||| ||||||| || || ||||  ||||  |||||||||||       |||| |||||||||||| ||||    
T  28019262 cccttctttcccgctccgattggatgctcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattg 28019163  T
Q  395 aaatttgaaatgtagttgt 413  Q
    |||| |||| |||||||||    
T  28019162 aaatgtgaattgtagttgt 28019144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 42414084 - 42413994
Alignment:
Q  318 atactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgta 408  Q
    |||| ||| |||||||||||| |||||||||||||  |||||||||||       ||||||| ||| |||||||||||||| |||| ||||    
T  42414084 atacccaaagtaaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgta 42413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 620
Target Start/End: Original strand, 41996504 - 41996533
Alignment:
Q  591 ccaccaatgagacactccatccatgtacac 620  Q
    ||||||||||||||||||||||||||||||    
T  41996504 ccaccaatgagacactccatccatgtacac 41996533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 14436 - 14520
Alignment:
Q  536 aagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgtacac 620  Q
    ||||||||||||||||||||||||| |||||||||| ||||| | ||  | || ||||||||||| |||||||||||||||||||    
T  14436 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccatccatgtacac 14520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 418
Target Start/End: Original strand, 15631811 - 15631940
Alignment:
Q  287 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 386  Q
    |||||||||| |||||||| |||  ||| |||||||||||| |||| || |   ||| ||||||||  |||||||||||       |||||  |||||||    
T  15631811 atatattgccattcttccccgct--aataggatactcaaggcaagggaatgattcaaaaataaagagtttagtccatgattctattacaccgggttcacc 15631908  T
Q  387 caaaattgaaatttgaaatgtagttgtctctt 418  Q
    |||||||||||| ||| |||||| ||||||||    
T  15631909 caaaattgaaatgtgatatgtagatgtctctt 15631940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 406
Target Start/End: Complemental strand, 2703843 - 2703723
Alignment:
Q  286 aatatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcac 385  Q
    ||||||||||||||||||| ||||||||| |||   |||| | |||  |||||  |||||  |||||  ||| |||||||       |||||||||||||    
T  2703843 aatatattgcccttcttccatgctccaataggactatcaatgcaagacaagggttcaacatcaaagagtttaatccatgattccttgacaccaagttcac 2703744  T
Q  386 ccaaaattgaaatttgaaatg 406  Q
    |||||||||||||||| ||||    
T  2703743 ccaaaattgaaatttggaatg 2703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 27716942 - 27717048
Alignment:
Q  286 aatatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcac 385  Q
    ||||||||||||||||||||| ||||||| |||| ||| | | |||  |||||||||| |  ||||| |||| |||||||       |||||| ||||||    
T  27716942 aatatattgcccttcttccctactccaataggatgctccatgcaagacaagggaccaatatcaaagagcttaatccatgattccttgacaccaggttcac 27717041  T
Q  386 ccaaaat 392  Q
    |||||||    
T  27717042 ccaaaat 27717048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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