View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0166_high_1 (Length: 311)
Name: NF0166_high_1
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 27430626 - 27430907
Alignment:
| Q |
8 |
gcccatactttctccattgatgaccatcttccacaggacgatcggactccttctcccatgtttgtgaaacttttctgaaaaataattacataattggata |
107 |
Q |
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| T |
27430626 |
gcccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaaacttttctgaaaaataattacataattggata |
27430725 |
T |
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| Q |
108 |
agttttctaattgtaccnnnnnnnctcaaaaccaagtaggactatgaaacaatcaaataattttactgtgtcagccaaaaccataataactagaggaaac |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430726 |
agttttctaattgtaccaaaaaaactcaaaaccaagtaggactatgaaacaatcaaataattttactgtgtcagccaaaaccataataactagaggaaac |
27430825 |
T |
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| Q |
208 |
aacaaaataaataaaaatgagagggcataattacaacctagtcctttcatcacatgtagtggatatgatgacaatgatgatg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430826 |
aacaaaataaataaaaatgagagggcataattacaacctagtcctttcatcacatgtagtggatatgatgacaatgatgatg |
27430907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 27448594 - 27448668
Alignment:
| Q |
10 |
ccatactttctccattgatgaccatcttccacaggacgatcggactccttctcccatgtttgtgaaacttttctg |
84 |
Q |
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|||||||||||||| |||||||||||||| |||| | || ||||||||||||||||||||||||| ||||||| |
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| T |
27448594 |
ccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaaatttttctg |
27448668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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