View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0166_high_2 (Length: 311)
Name: NF0166_high_2
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 66 - 282
Target Start/End: Complemental strand, 27430584 - 27430366
Alignment:
| Q |
66 |
ttttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatat |
165 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430584 |
ttttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatat |
27430485 |
T |
|
| Q |
166 |
ttatttatat--gctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcca |
263 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430484 |
ttatttatatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcca |
27430385 |
T |
|
| Q |
264 |
cctctttacaaaacaacct |
282 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27430384 |
cctctttacaaaacaacct |
27430366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 27447717 - 27447613
Alignment:
| Q |
178 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
277 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
|
|
| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
|
| Q |
278 |
aacct |
282 |
Q |
| |
|
||||| |
|
|
| T |
27447617 |
aacct |
27447613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27430643 - 27430594
Alignment:
| Q |
1 |
aatggagaaagtatgggcnnnnnnngatcttgcacaccgattttccaagg |
50 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27430643 |
aatggagaaagtatgggcaaaaaaagatcttgcacaccgattttccaagg |
27430594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1040 times since January 2019
Visitors: 1522