View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0166_high_3 (Length: 268)

Name: NF0166_high_3
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0166_high_3
NF0166_high_3
[»] chr3 (5 HSPs)
chr3 (42-246)||(11651873-11652077)
chr3 (146-246)||(48648903-48649003)
chr3 (146-234)||(51826769-51826857)
chr3 (91-130)||(48648835-48648874)
chr3 (49-77)||(51826988-51827016)
[»] chr7 (3 HSPs)
chr7 (42-246)||(31954498-31954702)
chr7 (146-237)||(31953570-31953661)
chr7 (91-130)||(31953690-31953729)
[»] chr5 (5 HSPs)
chr5 (42-237)||(41045956-41046151)
chr5 (42-190)||(31082169-31082317)
chr5 (42-136)||(22799148-22799242)
chr5 (42-136)||(19366001-19366095)
chr5 (151-234)||(16154735-16154818)
[»] chr4 (4 HSPs)
chr4 (42-246)||(5590306-5590513)
chr4 (42-246)||(48127857-48128064)
chr4 (146-246)||(24158550-24158650)
chr4 (91-130)||(24158482-24158521)
[»] chr1 (2 HSPs)
chr1 (42-136)||(50271194-50271288)
chr1 (146-246)||(50271067-50271167)
[»] chr2 (2 HSPs)
chr2 (146-246)||(23501793-23501893)
chr2 (51-130)||(23501917-23501996)
[»] chr6 (3 HSPs)
chr6 (146-220)||(33436004-33436078)
chr6 (91-130)||(33435936-33435975)
chr6 (49-77)||(33435845-33435873)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 11651873 - 11652077
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||         
T  11651873 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 11651972  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 241  Q
        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  11651973 ttttacataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttcttcccattg 11652072  T
Q  242 cttct 246  Q
     ||||    
T  11652073 tttct 11652077  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 48648903 - 48649003
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| |||    
T  48648903 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 48649002  T
Q  246 t 246  Q
    |    
T  48649003 t 48649003  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 51826857 - 51826769
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 234  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||    
T  51826857 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagcctcatttctcta 51826769  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 48648835 - 48648874
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  48648835 atgaatggaagtgatgttctacttgttcaacaagttcaat 48648874  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 51827016 - 51826988
Alignment:
Q  49 tattgaggacatggaattcataacaacaa 77  Q
    |||||||||||||||||||||||||||||    
T  51827016 tattgaggacatggaattcataacaacaa 51826988  T

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Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 31954702 - 31954498
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||         
T  31954702 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 31954603  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 241  Q
        |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  31954602 ttttacataatattgcttgttaatttaatcttgattaatattttgaattcaaaatgatcgaggctgctgtatcgtgcaagccccatttttctacccattg 31954503  T
Q  242 cttct 246  Q
     ||||    
T  31954502 tttct 31954498  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 31953661 - 31953570
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccc 237  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||    
T  31953661 acataataatgcttgttaatttaatcttcattaatattttgaattcaaaatgattgaggctgctgtgtcgtgcaagcctcatttctctaccc 31953570  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 31953729 - 31953690
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  31953729 atgaatggaagtcttgttctacttgttcaacaagttcaat 31953690  T

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Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 41045956 - 41046151
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||         
T  41045956 tcaaccgtattgagtacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaataagttcaatgcataatttat 41046055  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccc 237  Q
        |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  41046056 ttttacataataattcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctaccc 41046151  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 31082317 - 31082169
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||         
T  31082317 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactaatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttta 31082218  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaatt 190  Q
        ||||||||||||||||||||||||| |||||||||||||||||||    
T  31082217 ttttacataataatgcttgttaatttaatcttgattaatattttgaatt 31082169  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 22799242 - 22799148
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22799242 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataa 22799148  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 19366095 - 19366001
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||    
T  19366095 tcaaccgtattgaggacatggaattcataacaacgctgtattgccaccgatgatatgaagtgttgttctacttcttcaacaagttcaatgcataa 19366001  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 16154735 - 16154818
Alignment:
Q  151 ataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 234  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||    
T  16154735 ataatgcttgttaattaaatcttgattaatattttgaattcaaaatgatcgaggcggctgtatcgtgcaagcctcatttctcta 16154818  T

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Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 5590513 - 5590306
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa---nn 138  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  5590513 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 5590414  T
Q  139 nnnnnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 238  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5590413 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 5590314  T
Q  239 ttgcttct 246  Q
    ||| ||||    
T  5590313 ttgtttct 5590306  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 48127857 - 48128064
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa---nn 138  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  48127857 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 48127956  T
Q  139 nnnnnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 238  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  48127957 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 48128056  T
Q  239 ttgcttct 246  Q
    ||| ||||    
T  48128057 ttgtttct 48128064  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 24158550 - 24158650
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| |||    
T  24158550 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 24158649  T
Q  246 t 246  Q
    |    
T  24158650 t 24158650  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 24158482 - 24158521
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  24158482 atgaatggaagtgatgttctacttgttcaacaagttcaat 24158521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 50271288 - 50271194
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50271288 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 50271194  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 50271167 - 50271067
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||    
T  50271167 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctacccattgtttc 50271068  T
Q  246 t 246  Q
    |    
T  50271067 t 50271067  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 23501893 - 23501793
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||||| ||| |||    
T  23501893 acataataatgcttgttaatttaatcttgattaatattttgaattaaaaatgattgaggctagtgtatcgtgcaaacctcatttctctacccattgtttc 23501794  T
Q  246 t 246  Q
    |    
T  23501793 t 23501793  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 23501996 - 23501917
Alignment:
Q  51 ttgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||||||| ||||| ||||||||||| |||| ||||  |||||||| ||||||||| ||||||||| |||||||||||    
T  23501996 ttgaggacatagaattgataacaacaatatattaccactgatgaattgtagtgttgttatacttgttcgacaagttcaat 23501917  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 33436004 - 33436078
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaa 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  33436004 acataataatgcttgttaatttaatcttgattaatattttgaattcaaactgactgaggttgctgtatcgtgcaa 33436078  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 33435936 - 33435975
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33435936 atgaatggaagtgttgttctacttgttcaacaagttcaat 33435975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 33435845 - 33435873
Alignment:
Q  49 tattgaggacatggaattcataacaacaa 77  Q
    |||||||||||||||||||||||||||||    
T  33435845 tattgaggacatggaattcataacaacaa 33435873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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