View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0166_low_1 (Length: 451)
Name: NF0166_low_1
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166_low_1 |
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| [»] scaffold1583 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold1583 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 94 - 445
Target Start/End: Original strand, 688 - 1039
Alignment:
| Q |
94 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
193 |
Q |
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|||| ||||| |||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
688 |
catcgccaccgccttcaccatggtcaccttctcctcctccaccaccttctccaccagacctaaacaaaacaccaccatctccaaactcgccaccactctc |
787 |
T |
|
| Q |
194 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
293 |
Q |
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| T |
788 |
accgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
887 |
T |
|
| Q |
294 |
atttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatctt |
393 |
Q |
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| T |
888 |
attagtaaacccttgtttcaagcttctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcaaaaccaaagaagacaaaatctt |
987 |
T |
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| Q |
394 |
ctcaattgattggtgttcgaagatcaaataggattagggctggaattggaat |
445 |
Q |
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| T |
988 |
ctcaatcaattggtgttcgtagatcaaacagaattagggctggaataggaat |
1039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 94 - 435
Target Start/End: Complemental strand, 14275999 - 14275658
Alignment:
| Q |
94 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
193 |
Q |
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| T |
14275999 |
catcgccaccgccttcaccatggtcactgtctcctcctccaccaccttctccacctgacctaaacaaaacaccgccatctccaaactctccaccactctc |
14275900 |
T |
|
| Q |
194 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
293 |
Q |
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| T |
14275899 |
accgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
14275800 |
T |
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| Q |
294 |
atttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatctt |
393 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
14275799 |
attagtaaacccttgtttcaagcttctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcgaaaccaaagaagacaaaatctt |
14275700 |
T |
|
| Q |
394 |
ctcaattgattggtgttcgaagatcaaataggattagggctg |
435 |
Q |
| |
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|||||| ||||||||||| |||||||| || ||||| |||| |
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| T |
14275699 |
ctcaatcaattggtgttcgtagatcaaacagaattagagctg |
14275658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 99 - 451
Target Start/End: Original strand, 12921650 - 12922013
Alignment:
| Q |
99 |
ccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctcaccgc |
198 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| | |||| ||||||||||||||||| | |
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| T |
12921650 |
ccaccgccttcaccgtggtcaccttctcctcctccaccaccttctccacctgacctaaacaaaacaccaccattttcaaactctccaccactctcaccac |
12921749 |
T |
|
| Q |
199 |
cgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatgatttc |
298 |
Q |
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| T |
12921750 |
cgccatcagagacatctctgtctcctcttctaactcaacaacaaccaaactctccagaagatgaaccaccattaaacatcatgcctctagacatgattaa |
12921849 |
T |
|
| Q |
299 |
taaacccttgtttcaagcttctcca-----------ccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaa |
387 |
Q |
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||||||||||||||||||||||| | | | |||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||| |
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| T |
12921850 |
taaacccttgtttcaagcttctctaaataatttggccgaatcatcactcaaaccgctcctcatctcaaaaccttctctcaatcgaaaccaaataagacaa |
12921949 |
T |
|
| Q |
388 |
aatcttctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaa |
451 |
Q |
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| T |
12921950 |
aatcttctcaatcgattggtgttcgtagatcaaacaggattagggctggaataggaatcagaaa |
12922013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 94 - 445
Target Start/End: Complemental strand, 14638721 - 14638370
Alignment:
| Q |
94 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
193 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||| ||||||||||||| ||||||| ||||| ||||||| ||||||||||||||| || ||||||||||| |
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| T |
14638721 |
catcgccaccaccttcaccacggtcacattctcctcctccaccaccttctccaccagacctgaacaaaacaccaccatctccaaactcgccaccactctc |
14638622 |
T |
|
| Q |
194 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
293 |
Q |
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| T |
14638621 |
accgccaccatcagattcatctctgtctcctcttctaactcaacaacaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
14638522 |
T |
|
| Q |
294 |
atttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatctt |
393 |
Q |
| |
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||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| || || | ||||||| |||||| |||||||||||||||| |
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| T |
14638521 |
attagtaaacccttgtttcaagcttctccatcaataatcactcaaaccgctcctcatctaaaagctctttctcaatcgaaacccaagaagacaaaatctt |
14638422 |
T |
|
| Q |
394 |
ctcaattgattggtgttcgaagatcaaataggattagggctggaattggaat |
445 |
Q |
| |
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|||||| ||||||| |||| |||||||| ||||||||||||||||| ||||| |
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| T |
14638421 |
ctcaatcgattggtattcgtagatcaaacaggattagggctggaataggaat |
14638370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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