View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0166_low_4 (Length: 273)

Name: NF0166_low_4
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0166_low_4
NF0166_low_4
[»] chr8 (7 HSPs)
chr8 (46-229)||(40588762-40588945)
chr8 (54-237)||(13414987-13415170)
chr8 (54-225)||(23853908-23854079)
chr8 (56-222)||(478098-478264)
chr8 (62-237)||(8451171-8451346)
chr8 (54-237)||(7127187-7127370)
chr8 (146-221)||(185723-185797)
[»] chr4 (19 HSPs)
chr4 (54-237)||(41835351-41835534)
chr4 (73-237)||(21321491-21321655)
chr4 (73-237)||(49951277-49951441)
chr4 (62-226)||(28537835-28537997)
chr4 (62-223)||(55734987-55735148)
chr4 (62-221)||(2064833-2064992)
chr4 (62-225)||(32577096-32577259)
chr4 (65-225)||(29655717-29655877)
chr4 (62-222)||(51735020-51735179)
chr4 (62-225)||(18442195-18442356)
chr4 (73-225)||(56065605-56065757)
chr4 (62-221)||(37245900-37246059)
chr4 (62-237)||(51259577-51259753)
chr4 (62-215)||(28426169-28426322)
chr4 (62-215)||(49119448-49119601)
chr4 (62-222)||(43840354-43840515)
chr4 (63-168)||(44936131-44936236)
chr4 (62-177)||(47226378-47226493)
chr4 (62-174)||(26422650-26422762)
[»] chr1 (12 HSPs)
chr1 (54-237)||(44527217-44527400)
chr1 (77-237)||(16816863-16817022)
chr1 (62-237)||(4395123-4395297)
chr1 (57-222)||(52109433-52109597)
chr1 (62-223)||(5609317-5609478)
chr1 (54-225)||(25682627-25682798)
chr1 (62-225)||(51113291-51113454)
chr1 (54-224)||(48949764-48949934)
chr1 (46-237)||(36733660-36733851)
chr1 (66-222)||(48166216-48166372)
chr1 (167-221)||(24538490-24538544)
chr1 (62-110)||(2885314-2885362)
[»] chr5 (16 HSPs)
chr5 (62-227)||(25730782-25730947)
chr5 (54-237)||(4268063-4268246)
chr5 (57-237)||(11375556-11375736)
chr5 (62-237)||(27292398-27292573)
chr5 (62-238)||(15988797-15988973)
chr5 (56-237)||(20204919-20205100)
chr5 (62-237)||(8388050-8388225)
chr5 (62-225)||(22767305-22767468)
chr5 (54-222)||(26597497-26597665)
chr5 (92-225)||(27532984-27533117)
chr5 (75-237)||(37448089-37448251)
chr5 (146-222)||(12660295-12660371)
chr5 (62-225)||(34652302-34652464)
chr5 (62-187)||(41940785-41940909)
chr5 (149-225)||(30222934-30223010)
chr5 (62-170)||(32632546-32632654)
[»] chr2 (12 HSPs)
chr2 (62-237)||(88523-88698)
chr2 (65-237)||(12130689-12130861)
chr2 (56-225)||(34695946-34696113)
chr2 (56-225)||(34718358-34718525)
chr2 (66-199)||(1418033-1418166)
chr2 (82-209)||(18345555-18345681)
chr2 (129-220)||(9709910-9710001)
chr2 (146-225)||(44017450-44017529)
chr2 (152-225)||(26198669-26198742)
chr2 (63-109)||(11292111-11292157)
chr2 (62-135)||(22845602-22845675)
chr2 (62-151)||(13109917-13110006)
[»] chr3 (11 HSPs)
chr3 (54-237)||(53496996-53497179)
chr3 (54-237)||(42340317-42340500)
chr3 (62-225)||(55199487-55199650)
chr3 (146-225)||(2615469-2615548)
chr3 (149-222)||(27941129-27941202)
chr3 (54-221)||(46007282-46007446)
chr3 (65-237)||(48227377-48227550)
chr3 (146-224)||(647343-647421)
chr3 (54-113)||(27608943-27609002)
chr3 (54-113)||(34497412-34497471)
chr3 (54-157)||(647203-647306)
[»] chr7 (14 HSPs)
chr7 (54-227)||(16731907-16732080)
chr7 (54-227)||(17710041-17710214)
chr7 (54-224)||(16098467-16098637)
chr7 (62-222)||(9328650-9328810)
chr7 (57-237)||(1581579-1581760)
chr7 (54-225)||(22289217-22289388)
chr7 (62-219)||(29201003-29201160)
chr7 (62-225)||(30493658-30493820)
chr7 (138-216)||(17877393-17877471)
chr7 (73-123)||(3275112-3275162)
chr7 (138-179)||(3601683-3601724)
chr7 (138-221)||(30824599-30824681)
chr7 (62-110)||(3601743-3601791)
chr7 (173-225)||(34578437-34578489)
[»] chr6 (7 HSPs)
chr6 (55-227)||(14680136-14680308)
chr6 (62-225)||(15606042-15606205)
chr6 (63-224)||(30802040-30802201)
chr6 (56-236)||(29368098-29368276)
chr6 (62-222)||(15053223-15053383)
chr6 (149-222)||(28107118-28107191)
chr6 (54-221)||(11731709-11731873)
[»] scaffold0446 (1 HSPs)
scaffold0446 (73-225)||(162-314)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 40588762 - 40588945
Alignment:
Q  46 atcatcagggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcc 145  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  40588762 atcatcatggcccggggacgatagagtttacactagagtagatgaatcagactcaaagacaacccggtctcatctgtttgcatccgcaaaacgaagggcc 40588861  T
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgcta 229  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  40588862 tcgagtacggctactgcctccccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaattgcctgcta 40588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 13415170 - 13414987
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||||||||||| |  ||||||||||||||| |||||||||||||||||||| |  ||| |||||||||||||||||||| ||||||||||||||||    
T  13415170 ggcccggggacgatataccttgcactagagtagaagaatcggactcaaagacaactcgatcccatctgtttgcatccgcaaaaggaagggcctcgagtaa 13415071  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||    
T  13415070 ggctactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctct 13414987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 23854079 - 23853908
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||||| |||||||||||| ||||| |||||||| |||||||| |||||  ||||||| |||||  ||||  ||| |||||| |||||    
T  23854079 ggcccggagacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggcctcaagtaa 23853980  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||| |||||| |||||||||||||| ||||||  |||||| ||||| |||||| ||||||||||||||||    
T  23853979 ggctactgcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccgaataaattgccc 23853908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 478098 - 478264
Alignment:
Q  56 cccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaagg 155  Q
    ||||| |||||||||| ||||||||||||||  || || || || |||| ||||| |||| |||| ||  |||  |||||  ||| ||| ||||||||||    
T  478098 cccggagacgatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggcatcgagtaagg 478197  T
Q  156 ctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  478198 ctactgcctccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattg 478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 8451171 - 8451346
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    ||||||| || |||||||| ||||||||| || ||||| |||||||||| |||| ||| |||  |||| || ||  ||| ||  |||||||| |||| ||    
T  8451171 gacgataaagcttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatggaatcgagtaaagctactg 8451270  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||| || | |||||||||    
T  8451271 cctccccctccaacactgtcatatttgcccgcttcctttttgtttgagcccgaataaattgtccacaagagtctct 8451346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 7127370 - 7127187
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| ||||| |||| |||||||| |||||   | || ||||| ||| |||||| |||| |||||||  |||| |||||  |||  || ||||||||    
T  7127370 ggcccggagacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaatagcatcgagtaa 7127271  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| | ||||||||||||||||| | ||||||||||| | ||||||  |||| || |||||||||| ||| | |||||||||    
T  7127270 ggctactacctccccctccaaaactttcatatttgcccgtttccatttcatttgtgcacgaataaatttcccccgagagtctct 7127187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 185723 - 185797
Alignment:
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaatt 221  Q
    ||||||||||||| | ||||||| ||||||||||| ||||||||||| | |||||| ||||||||||  |||||||    
T  185723 tcgagtaaggctacttcctcccc-tccaaaactgtcatatttgcccgtttccatttcgtttgagcccagataaatt 185797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 41835351 - 41835534
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| |||||| |||||||||    
T  41835351 ggcccggagacgatagcgtttgcactagagtagatgaatcgaactcgaagacaacccggtcccatctgtttgcatccgcaaaatgaagggtctcgagtaa 41835450  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| ||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| | || |||||||||    
T  41835451 ggctactgcatccccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctct 41835534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 21321655 - 21321491
Alignment:
Q  73 ttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctcc 172  Q
    |||||||||||||||||| |||||||| |||||||||| |||| ||||||| ||||| | |||  ||||||||||||||||||||| || ||||||||||    
T  21321655 ttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctcc 21321556  T
Q  173 aaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||    
T  21321555 aaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcccgcgagagtctct 21321491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 49951441 - 49951277
Alignment:
Q  73 ttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctcc 172  Q
    ||||||||||||||| || |||||||| |||||||| | || | ||||||| ||||| |||||  ||||||||||||||||||||| |||||||||||||    
T  49951441 ttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctcc 49951342  T
Q  173 aaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    || ||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||    
T  49951341 aatactgtcatatttgcccgctgccatttcgtttgagcccgaataaattggccgcgagaatctct 49951277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 28537835 - 28537997
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||| ||||||||| |||||||  || ||||||| |||| ||||||| |||||  ||||  ||||||||||||||||||||| ||    
T  28537835 gacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaagggcctcgagtaaggctactg 28537934  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccg 226  Q
    ||||||||||  ||||| | |||||| ||||||||||||| ||||||||||||||||||||||||    
T  28537935 cctccccctc--aaactatcatattttcccgctgccatttcgtttgagcccgaataaattgcccg 28537997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 55735148 - 55734987
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| ||||||||||||||||||||||||||| || | ||||| || | || |||| ||| |  ||||  ||||||||||||||||||||| ||    
T  55735148 gacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggcctcgagtaaggctactg 55735049  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgc 223  Q
    ||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||| |||||||    
T  55735048 cctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccgaacaaattgc 55734987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 2064992 - 2064833
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaaccc-agtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagt 160  Q
    |||||||||| |||  ||||||||||||| || |||||||||||||||| | ||| |||||||  |||| |||||  ||||||| ||||||||||||| |    
T  2064992 gacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgactcc-atctgttctcatcagcaaagtgaagggcgtcgagtaaggctact 2064894  T
Q  161 gcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaatt 221  Q
    |||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||    
T  2064893 gcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccgaataaatt 2064833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 32577096 - 32577259
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||| ||| ||||||||||||||  || || ||||| ||||||||||||||| || ||||| |||| |||||   ||  ||  ||||||||||||||     
T  32577096 gacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagcagcgagtaaggctagta 32577195  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    |||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  32577196 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgccc 32577259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 29655717 - 29655877
Alignment:
Q  65 gatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcct 164  Q
    ||||||| ||||||||||||||   | || ||||| |||||||| | || | |||||||  |||| |||||  ||| | | ||||||||||||| |||||    
T  29655717 gatagagcttgcactagagtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcct 29655816  T
Q  165 ccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  29655817 ctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccgaataaattgccc 29655877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 51735020 - 51735179
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| ||||||||||||||| ||  | ||||| |||||||| | ||||||||| ||  |||| |||||  ||| ||| ||||||||||||| ||    
T  51735020 gacgatagagcttgcactagagtagaggagcctgactcgaagacaactc-gtcctatctattcacatcagcaaagtgaatggcatcgagtaaggctactg 51735118  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    ||||||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||||    
T  51735119 cctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccgaataaattg 51735179  T

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Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 18442195 - 18442356
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    ||||||| || |||||||||  ||||||| ||| |||| || | ||||| || | ||||||| ||| | |||||  | ||||||||||||||||||| ||    
T  18442195 gacgatatagcttgcactag--tagatgagtcgcactcgaaaataacccggttccatctgttcgcaacagcaaagtgtagggcctcgagtaaggctactg 18442292  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||||||||||| ||||| |||||| |||||| |||||| |||||||||||||||||||||||    
T  18442293 cctccccctccaatactgtcatattttcccgcttccatttcgtttgagcccgaataaattgccc 18442356  T

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Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 56065757 - 56065605
Alignment:
Q  73 ttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctcc 172  Q
    |||||||||||||| ||| |||||||| |||||||||| |||| || | ||  || | |||||  ||| ||| ||||||||||| | |||||||||||||    
T  56065757 ttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctcc 56065658  T
Q  173 aaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    |||||||| |||||||| || || ||||| |||||||||||||| ||||||||    
T  56065657 aaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgccc 56065605  T

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Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 37245900 - 37246059
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    ||||| |||| |||||||| |||||  || || ||||| |||||||||| |||| |||||||  |||  |||||  |||  || ||||||||||||| ||    
T  37245900 gacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagcatcgagtaaggctactg 37245999  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaatt 221  Q
    ||||||||||||||||||| ||||||||||| | |||||| ||||| |||||||||||||    
T  37246000 cctccccctccaaaactgtcatatttgcccgtttccatttcgtttgtgcccgaataaatt 37246059  T

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Target: chr4; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 51259577 - 51259753
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||| | |||||||||||||| ||| |||||||| |||||||||  |||| | ||| |  || | |||||  ||| | | ||||||||||| | ||    
T  51259577 gacgatagcgcttgcactagagtagctgagtcggactcgaagacaacctggtccgaactgatcccaacagcaaagtgaatgacatcgagtaaggcaactg 51259676  T
Q  162 cctcccc-ctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||||| |||||||||||| |||||||| || |||||||| |||||||||||||| |||||||| | |||||||||    
T  51259677 cctcccccctccaaaactgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgcccacgagagtctct 51259753  T

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Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 28426322 - 28426169
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| | |||||||||||   || || ||||  |||||||||| |||| |||||||| |||| |||||  |||  ||  |||||||||||| ||    
T  28426322 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 28426223  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaa 215  Q
    |||||||||||||||| || ||||||||| | |||||||| |||||||||||||    
T  28426222 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa 28426169  T

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Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 49119448 - 49119601
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| | |||||||||||   || || ||||  |||||||||| |||| |||||||| |||| |||||  |||  ||  |||||||||||| ||    
T  49119448 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 49119547  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaa 215  Q
    |||||||||||||||| || ||||||||| | |||||||| |||||||||||||    
T  49119548 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa 49119601  T

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Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 43840354 - 43840515
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagt- 160  Q
    |||||||||| ||||| |||||||| ||| ||| |||| ||||||| || |||  || ||||  |||| |||||  ||| ||| |||||||| | | ||     
T  43840354 gacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtctcatttgttcacatcagcaaagtgaatggcatcgagtaaaggttgtt 43840453  T
Q  161 gcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    | |||||||||||| ||||| ||||||| |||||||||||| |||||| |||||||||||||    
T  43840454 gtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccccgaataaattg 43840515  T

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Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 44936131 - 44936236
Alignment:
Q  63 acgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgc 162  Q
    ||||||||||||||||||||||| |||| |||||||| || |||||||| |   ||||||||||||  |||||   ||||  |||||||||||||| |||    
T  44936131 acgatagagtttgcactagagtaaatgagtcggactcgaacacaacccaatttcatctgtttgcattagcaaagtaaaggatctcgagtaaggctattgc 44936230  T
Q  163 ctcccc 168  Q
    ||||||    
T  44936231 ctcccc 44936236  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 47226378 - 47226493
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||| ||| ||||||||| |||||||| || ||||| |  ||  ||||||| ||||| |||||  |||  |||||||||||| ||| |     
T  47226378 gacgatagagcttgctctaaagtagatgagtcggactcgaacacaactcgatctcatctgttcgcatcagcaaagtgaaaagcctcgagtaagactatta 47226477  T
Q  162 cctccccctccaaaac 177  Q
    ||||||||||||||||    
T  47226478 cctccccctccaaaac 47226493  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 26422650 - 26422762
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||   || || ||||| ||||||||||  ||| |||||||| |||| |||||   ||  || ||||||||||||| ||    
T  26422650 gacgatagagcttgcactagagtatcagagtcagactcgaagacaacccgatcccatctgtttacatcagcaaagtaaatagcatcgagtaaggctactg 26422749  T
Q  162 cctccccctccaa 174  Q
    |||||| ||||||    
T  26422750 cctccctctccaa 26422762  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 44527400 - 44527217
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| || ||||||| |||||| ||||||||||| |||||||| |||||||||| |||| ||||||| ||||| |||||  |||||||||| |||||    
T  44527400 ggcccggagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaa 44527301  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||    
T  44527300 ggctactgcctccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccgaataaattgcccacaagagtctct 44527217  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 16816863 - 16817022
Alignment:
Q  77 actagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctccaaaa 176  Q
    ||||||||||| || |||||||| |||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||    
T  16816863 actagagtagacgagtcggactcgaagacaacccggtcccatctgtttgcatcagcaaaatgaagggcctcgagtaaggctactgcct-cccctccaaaa 16816961  T
Q  177 ctgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
     ||| |||||||||| ||||||||||| |||||| |||||||||||| ||| |||||||||    
T  16816962 ttgtcatatttgcccactgccattttgattgagctcgaataaattgcacgcgagagtctct 16817022  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 4395297 - 4395123
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||||||| | |||||| |||| ||||  |||| |||| || ||||| |||||  ||||||||||||||||||||||||    
T  4395297 gacgatagagcttgcactagagtagatgagttggactcgaagataacctggtcccatctattcgcatcagcaaagtgaagggcctcgagtaaggctagtg 4395198  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||| ||||| ||||||| | |||||||||||||||||||| | ||||||||| ||||||||||| | |||||||||    
T  4395197 cct-ccccttcaaaactctcatatttgcccgctgccatttcgattgagcccggataaattgcccacgagagtctct 4395123  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 52109597 - 52109433
Alignment:
Q  57 ccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggc 156  Q
    |||| ||| |||||| ||| |||||||||||||||||  |||||||||||||||| ||| ||||||| ||||| |||||  ||||| |||||||||||||    
T  52109597 ccggagacaatagagcttgtactagagtagatgaatcacactcaaagacaaccca-tcccatctgttagcatcagcaaagtgaaggacctcgagtaaggc 52109499  T
Q  157 tagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    || ||| |||||||||||||   | |||||||||||||||||||| ||||||||| ||||||||||    
T  52109498 tactgcatccccctccaaaatgatcatatttgcccgctgccatttcgtttgagcctgaataaattg 52109433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 5609478 - 5609317
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||  ||  ||||||| ||| |  ||||  ||||| ||||||||||||||| ||    
T  5609478 gacgatagagtttgcactagagtagatgagtcgaactcgaagacaacccgatctcatctgttcgcaacatcaaagtgaaggacctcgagtaaggctactg 5609379  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgc 223  Q
    ||||||||| ||||||| | ||||||| |||||| |||   |||||||||||||||||||||    
T  5609378 cctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccgaataaattgc 5609317  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 25682798 - 25682627
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||||| ||| |||||||||| ||| ||  |||| |||||| ||| |||| |||||||  |||  |||||  ||| | | ||||||||    
T  25682798 ggcccggagacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatgacatcgagtaa 25682699  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||| ||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||  |||||||||||    
T  25682698 ggctactgcctccccctccaacactgtcatatttgcccgttgccatttcgtttgagcccagataaattgccc 25682627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 51113454 - 51113291
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||| | |||||||||||||| ||| |||||||| |||||||||| |||| |||||||  || |  ||||  ||| | | ||||||||||| | ||    
T  51113454 gacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgacatcgagtaaggcaactg 51113355  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    |||||||||||||||| ||||||||||| || |||||||| ||||||| |||||| ||||||||    
T  51113354 cctccccctccaaaacggttatatttgctcgttgccatttcgtttgagtccgaatgaattgccc 51113291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 48949764 - 48949934
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||| | |||||||||||||| ||| | | |||| |||||||||| |||| |||||||  || |  ||||  |||  || ||||||||    
T  48949764 ggcccggagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgcatcgagtaa 48949863  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcc 224  Q
    ||| | ||||||||||||||||||| | |||||||| || |||||||| |||||||||||||| |||||||    
T  48949864 ggcaactgcctccccctccaaaactttcatatttgctcgttgccatttcgtttgagcccgaatgaattgcc 48949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 36733851 - 36733660
Alignment:
Q  46 atcatcagggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcc 145  Q
    ||||||| ||||||| ||||||| || ||||||||||||    || || ||||| |||||||||| |||| || ||||  |||| |||||  |||   |     
T  36733851 atcatcatggcccggagacgatatagcttgcactagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataaca 36733752  T
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    | ||||||| ||| ||||||||||||||||||||  |||||| |||| || |||||||||||||||||||||||||| || | |||||||||    
T  36733751 ttgagtaagactactgcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccgaataaattgtccacgagagtctct 36733660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 48166372 - 48166216
Alignment:
Q  66 atagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctc 165  Q
    |||||| ||||| |||||||| |||||| ||||| ||||||||||  ||| || | ||  |||  |||||  ||| | | ||||||||||||| || |||    
T  48166372 atagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattcacataagcaaagtgaatgacatcgagtaaggctattgtctc 48166273  T
Q  166 cccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    || |||||||||||| |||||||| |||||||||||  |||||||||||||||||||    
T  48166272 ccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattg 48166216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 24538544 - 24538490
Alignment:
Q  167 ccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaatt 221  Q
    ||||||||||||||  |||||||| ||||||| || |||||||||||||||||||    
T  24538544 ccctccaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaatt 24538490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 2885362 - 2885314
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaaccc 110  Q
    |||||||||| |||||||||||||| ||| || ||||| ||||||||||    
T  2885362 gacgatagagcttgcactagagtagctgagtctgactcgaagacaaccc 2885314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 25730947 - 25730782
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||| |||||| ||||||| ||||| |||||  ||||||||||||||||||||| ||    
T  25730947 gacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactg 25730848  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgc 227  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||    
T  25730847 cctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcgaataaatttcccgc 25730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 4268246 - 4268063
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| || ||||||| |||||||||||||||||| |||||||| |||| ||||| |||| | ||||| ||||| |||||  |||||||||| |||||    
T  4268246 ggcccggagatgatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggcctctagtaa 4268147  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  4268146 ggctactgcctccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctgaataaattgcccacgagagtctct 4268063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 11375556 - 11375736
Alignment:
Q  57 ccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggc 156  Q
    |||| |||||||||| |||||||||| |||||||||| |||||||||||||||| |||| || | ||||||||||||||| |||||||||||||||||||    
T  11375556 ccggagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggcctcgagtaaggc 11375655  T
Q  157 tagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    || || |||||||||||||||||| |||||| | ||||||||||| ||||||| ||||||||||  || || |||||||||    
T  11375656 tactgtctccccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacctgcgagagtctct 11375736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 27292573 - 27292398
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||||||||||||||| |||||| ||| |||| |||||||||| |||| |||||||  |||| |||||  ||||||| || |||||||||| ||    
T  27292573 gacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaagggcatctagtaaggctattg 27292474  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||||||| ||||||  | ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||    
T  27292473 cctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccgaataaattgcccacgagagtctct 27292398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 15988797 - 15988973
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||| |||  ||||||  |||||||||| |||| || |||| ||||| |||||   ||||||||||||||||| || ||    
T  15988797 gacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggcctcgagtaaggttactg 15988896  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctctg 238  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||| | ||||||||    
T  15988897 cctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgctcgcgaaagtctctg 15988973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 20205100 - 20204919
Alignment:
Q  56 cccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaagg 155  Q
    ||||| || ||||||| |||||||||||||||||| |||||||| |||||||| | || | ||||||| ||| |  ||||  ||| ||||||||||||||    
T  20205100 cccggagaggatagagcttgcactagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaacaacaaagtgaatggcctcgagtaagg 20205001  T
Q  156 ctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||| ||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| | ||||||| |||||  ||||||||    
T  20205000 ctactgcctccccctccaatactgtcatatttgcccgttgccatttcgtttgagcctggataaatttcccgcgggagtctct 20204919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 8388225 - 8388050
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||| | |||||||||||||| ||| |||||||| |||||||||| |||| |||||||  || |||||||  ||| ||| ||||||||||| | ||    
T  8388225 gacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactg 8388126  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||||||||||||||||| |||||||  || |||||||| ||||||||| |||| |||||||| | |||||||||    
T  8388125 cctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaatgaattgcccacgagagtctct 8388050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 22767305 - 22767468
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||   || ||  |||| |||||||||| |||| |||||||| |||| |||||  |||  ||  |||||||||||| ||    
T  22767305 gacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 22767404  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    |||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  22767405 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgccc 22767468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 26597497 - 26597665
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||| | |||||||||||||| ||| |||||||| |||||||||| |||  |||| ||  || | |||||  ||| ||| ||||||||    
T  26597497 ggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggcatcgagtaa 26597596  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    ||| | ||||||||||||||||| ||| |||||||| || |||||||| |||||||||||||| |||||    
T  26597597 ggcaactgcctccccctccaaaattgtcatatttgctcgttgccatttcgtttgagcccgaatgaattg 26597665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 27532984 - 27533117
Alignment:
Q  92 tcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctccaaaactgttatatttgccc 191  Q
    |||||||| || ||||||| |||| |||| ||  |||| |||||  ||| | | |||| ||| |||| |||||||||||||||||||||||||||| ||     
T  27532984 tcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgacatcgaataaagctattgcctccccctccaaaactgttatattttcct 27533083  T
Q  192 gctgccattttgtttgagcccgaataaattgccc 225  Q
    ||| |||||| |||||||||||||||||||||||    
T  27533084 gctaccatttcgtttgagcccgaataaattgccc 27533117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 37448251 - 37448089
Alignment:
Q  75 gcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctccaa 174  Q
    |||||||||||| ||||| | |||| |||||||||| || | |||||||  |||| |||||  ||| | | |||||||||||||  |||||||| | |||    
T  37448251 gcactagagtagttgaattgaactcgaagacaacccggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctaccgcctcccctttcaa 37448152  T
Q  175 aactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
     ||||| || ||||| ||||||||||||||||||| ||||||| |||| || | |||||||||    
T  37448151 cactgtcatgtttgcacgctgccattttgtttgagtccgaatacattgtccacgagagtctct 37448089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 12660371 - 12660295
Alignment:
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    ||||||||| ||| |||||||| ||| || ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12660371 tcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccgaataaattg 12660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 34652302 - 34652464
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||| ||||| ||||||||||||||  || |||| ||| ||||||||||  ||| |||||||  |||| |||||  ||| ||| |||||||||| || |     
T  34652302 gacggtagagcttgcactagagtagtcgagtcgggctcgaagacaacccgatcccatctgttcacatcggcaaagtgaatggcatcgagtaaggttatta 34652401  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
     |||||| | ||| ||||| |||||||| ||||||| ||||||||||| ||| |||||||||||    
T  34652402 tctccccttacaacactgtcatatttgctcgctgcc-ttttgtttgagaccggataaattgccc 34652464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 41940785 - 41940909
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||| |||| |  ||||  |||  |||||  ||| | | | ||||||||||| ||    
T  41940785 gacgatagagtttgcactagagtagttgagtcggactcgaagacaacccggtcc-agttgttcacatgagcaaagtgaatgacattgagtaaggctattg 41940883  T
Q  162 cctccccctccaaaactgttatattt 187  Q
     |||||||||||||||||| ||||||    
T  41940884 tctccccctccaaaactgtcatattt 41940909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 30222934 - 30223010
Alignment:
Q  149 agtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||| |||| || ||||| |||||||||||| | ||| ||  ||||| | || |||||||||||||||||||||||    
T  30222934 agtaaagctactgtctccctctccaaaactgtcaaattcgcttgctgcaaattcgtttgagcccgaataaattgccc 30223010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 32632654 - 32632546
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    ||||||| || || ||||| ||||||||| || |||||||||||||||| ||   |||| || | ||| | |||| ||| |||||||||||||| || ||    
T  32632654 gacgataaagcttacactaaagtagatgagtcagactcaaagacaacccggtttaatctattcgtatcagtaaaatgaaaggcctcgagtaaggttattg 32632555  T
Q  162 cctccccct 170  Q
     ||||||||    
T  32632554 tctccccct 32632546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 88698 - 88523
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||| |||| ||||||| |||||  ||||  ||||||||||||||||||||| ||    
T  88698 gacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctactg 88599  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||||||||||||||||| ||||||||||  ||||||||  |||||||||||||||||||||||| |||||||||    
T  88598 cctccccctccaaaactgtcatatttgcccattgccatttcatttgagcccgaataaattgcccgcgagagtctct 88523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 12130689 - 12130861
Alignment:
Q  65 gatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcct 164  Q
    ||||||| ||| |||||||||||||| || ||||| |||| |||||  | | |||| |||||||| |||||  |||| ||||| |||||||||| |||||    
T  12130689 gatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagcctcaagtaaggctactgcct 12130788  T
Q  165 ccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    |||||||||| ||| | |||||||| ||||| ||||| |||||||||||||||| ||||||||  ||||||||    
T  12130789 ccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccgaataatttgcccgcgggagtctct 12130861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 34695946 - 34696113
Alignment:
Q  56 cccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaagg 155  Q
    ||||| |||||||  | ||||||||||||||  || |||||||| ||||||||||  ||| |||| ||  |||| |||||  ||| ||||| ||||||||    
T  34695946 cccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaagg 34696045  T
Q  156 ctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||| ||||||||||||||||||||| |||||||||||||||||  | | |||||||||||||||||||||    
T  34696046 ctactgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgccc 34696113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 34718358 - 34718525
Alignment:
Q  56 cccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaagg 155  Q
    ||||| |||||||  | ||||||||||||||  || |||||||| ||||||||||  ||| |||| ||  |||| |||||  ||| ||||| ||||||||    
T  34718358 cccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaagg 34718457  T
Q  156 ctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||| ||||||||||||||||||||| |||||||||||||||||  | | |||||||||||||||||||||    
T  34718458 ctactgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgccc 34718525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 1418033 - 1418166
Alignment:
Q  66 atagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctc 165  Q
    |||||| ||| |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| | ||   ||||||||||||||| || |||    
T  1418033 atagagcttgaactagagtagatgagtcagactcgaagacaacccagtcccatctgtttgcatcagcaaatcaaattacctcgagtaaggctactgtctc 1418132  T
Q  166 cccctccaaaactgttatatttgcccgctgccat 199  Q
     |||| || ||| || ||||||||||||| ||||    
T  1418133 tcccttcataaccgtcatatttgcccgctaccat 1418166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 18345555 - 18345681
Alignment:
Q  82 agtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctccaaaactgtt 181  Q
    ||||||||| ||||| || |||||||  |  ||| ||||||| ||||| |||||  ||||||||||||||||||||| ||||||||||| |||||||||     
T  18345555 agtagatgagtcggattcgaagacaattcgatcccatctgttagcatcagcaaagtgaagggcctcgagtaaggctactgcctccccct-caaaactgtc 18345653  T
Q  182 atatttgcccgctgccattttgtttgag 209  Q
    ||||||| ||| | |||||| |||||||    
T  18345654 atatttgtccgttaccatttcgtttgag 18345681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 9710001 - 9709910
Alignment:
Q  129 ccgcaaaacgaagggcctcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaat 220  Q
    |||||||  ||| ||| ||||||||||| | ||||||||||||||||||||| |||||||  || |||||||| ||||||||| ||||||||    
T  9710001 ccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaataaat 9709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 44017450 - 44017529
Alignment:
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    |||||||||| |  || |||||||||||||||||| |||||||| || || |||||| ||||||||||||||||||||||    
T  44017450 tcgagtaaggttgttgtctccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgccc 44017529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 26198742 - 26198669
Alignment:
Q  152 aaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||||| ||| ||||||||||||||||| |||||||  |||| ||||||| ||||||| ||||||||||||||    
T  26198742 aaggctactgcatccccctccaaaactgtcatatttgttcgctaccattttatttgagctcgaataaattgccc 26198669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 11292111 - 11292157
Alignment:
Q  63 acgatagagtttgcactagagtagatgaatcggactcaaagacaacc 109  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  11292111 acgatagagcttgcactagagtagatgagtcggactcaaagacaacc 11292157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 22845675 - 22845602
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaa 135  Q
    |||||||||| |||||||||||||||| | | |||||| |||||||||| |||| ||||||| ||||| |||||    
T  22845675 gacgatagagcttgcactagagtagattagttggactcgaagacaacccggtcccatctgttcgcatcagcaaa 22845602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 13109917 - 13110006
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagt 151  Q
    |||||||||| || |||||||||||| || |||||||| |||||||||  |||| ||||| | ||||| || ||  ||||||||||||||    
T  13109917 gacgatagagcttccactagagtagaagagtcggactcgaagacaaccatgtcccatctgatcgcatcagctaagtgaagggcctcgagt 13110006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 53497179 - 53496996
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||||| |||||| ||||||||||| |||||||| |||||||||| |||| ||||||| ||||| |||||  |||||||||| |||||    
T  53497179 ggcccggagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaa 53497080  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| |||||||||||| |||||||| | ||||| |||||| ||||||||||||||||||||||||||||| | |||||||||    
T  53497079 ggctactgcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccgaataaattgcccacaagagtctct 53496996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 42340317 - 42340500
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| ||||| |||| |||||||| ||||| ||| || ||||| |||||||| | |||| |||||||  |||| |||||  ||| | | |||||||     
T  42340317 ggcccggagacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgacatcgagtag 42340416  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    ||||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| || | |||||||||    
T  42340417 ggctattgcctccccctccaacactgtcatatctgcccgctgccattttgtttgagcccgaataaattgtccacgagagtctct 42340500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 55199650 - 55199487
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||| | |||||| ||||||| ||| |||||||  |||||||||| |||| |||||||| || |  ||||  ||| ||| ||||||||||| | ||    
T  55199650 gacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggcatcgagtaaggcaactg 55199551  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||||||||||||||||| ||||||  | |||| ||||| |||||||||||||| ||||||||    
T  55199550 cctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccgaatgaattgccc 55199487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 2615548 - 2615469
Alignment:
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||| || |||||||||||||| ||||||||    
T  2615548 tcgagtaaggctactgcctccccctccaaaactatcatatttgcccgctgccaattcgtttgagcccgaatgaattgccc 2615469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 27941129 - 27941202
Alignment:
Q  149 agtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    |||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||    
T  27941129 agtaaggctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattg 27941202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 46007446 - 46007282
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||| |||||| ||    || |||||||   |||  ||||  ||| ||| || |||||    
T  46007446 ggcccggagacgatatagtttgcactagagtagttgaatcggactcgaagacacccg---cccatctgttcatatcgacaaagtgaatggcatcaagtaa 46007350  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaatt 221  Q
    ||||| || ||||||||  |||| |||  ||||||||||||||||||| |||||||||||||||||||    
T  46007349 ggctactgtctccccctaaaaaattgtcgtatttgcccgctgccatttcgtttgagcccgaataaatt 46007282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 48227550 - 48227377
Alignment:
Q  65 gatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggc-ctcgagtaaggctagtgcc 163  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| | ||  ||||  ||  |||| |||||  || |||  |||||||||||||| |||     
T  48227550 gatagagcttgcactagagtagatgagtcggactcaaagacaactcggttttatccattcacatcagcaaagtgatggggtctcgagtaaggctactgca 48227451  T
Q  164 tccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    |||| |||||| || || || ||| ||| ||||  ||| |||| |||||||||||||||||||| |||||||||    
T  48227450 tcccactccaatacagtcatgttttcccactgctgtttcgtttaagcccgaataaattgcccgcgagagtctct 48227377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 647343 - 647421
Alignment:
Q  146 tcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcc 224  Q
    ||||||||||||  |||||||||||||| |||||| ||||| |||||||||||||| ||||||||||| | ||||||||    
T  647343 tcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgagcccggaaaaattgcc 647421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 27608943 - 27609002
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagt 113  Q
    ||||||| |||||||| | |||||||||||||| ||| |||||||| |||||||||||||    
T  27608943 ggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccagt 27609002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 34497412 - 34497471
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagt 113  Q
    ||||||| |||||||| | |||||||||||||| ||| |||||||| |||||||||||||    
T  34497412 ggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccagt 34497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 647203 - 647306
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||||| |||||||||||||||||| || ||||| |||| ||| | |||  |||||||  |||| |||||  ||| | | ||||||||    
T  647203 ggcccggagacgatagagcttgcactagagtagatgagtcagactcgaagataactcggtcacatctgttcacatcagcaaagtgaatgacatcgagtaa 647302  T
Q  154 ggct 157  Q
    ||||    
T  647303 ggct 647306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 16732080 - 16731907
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| || ||||||| ||||||||||||||| || |||||||| |||||||| | || | ||||||| ||||| ||| |  ||| ||||||||||||    
T  16732080 ggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaa 16731981  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgc 227  Q
    ||||| ||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  16731980 ggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgc 16731907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 17710214 - 17710041
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| || ||||||| ||||||||||||||| || |||||||| |||||||| | || | ||||||| ||||| ||| |  ||| ||||||||||||    
T  17710214 ggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaa 17710115  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgc 227  Q
    ||||| ||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  17710114 ggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgc 17710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 16098637 - 16098467
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||| ||| ||| |||||||||||||| |||||||| |||||||||| |||| || |||| ||||| |||||  |||||||||| |||||    
T  16098637 ggcccggagacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtcccatttgttagcatcagcaaattgaagggcctctagtaa 16098538  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcc 224  Q
    ||||| | |||| |||||||||| ||| |||||||  || | |||||| ||||||||||||||||||||||    
T  16098537 ggctactacctctccctccaaaattgtcatatttgttcgtttccatttcgtttgagcccgaataaattgcc 16098467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 9328650 - 9328810
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||   || || ||||| |||||||||| |||| |||||||| |||| |||||  |||  ||  |||||||||||| ||    
T  9328650 gacgatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 9328749  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    |||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||||    
T  9328750 cctccccctccaaaacagtcatattttcccgttgccatttcgtttgagctcgaataaattg 9328810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 1581760 - 1581579
Alignment:
Q  57 ccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggc 156  Q
    |||| |||||||||||||||| ||| |||||||| | |||||| || | |||||  ||  ||||||| ||||| |||||  |||||||||||||||||||    
T  1581760 ccggagacgatagagtttgcattagtgtagatgagttggactccaatagaacccgatctcatctgttcgcatcagcaaagtgaagggcctcgagtaaggc 1581661  T
Q  157 tagtgcct-ccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctct 237  Q
    || ||| | ||||||| |||||| | |||||||||| ||||||||| ||||||||||| ||||| |  ||||| ||||||||    
T  1581660 tactgcatcccccctcaaaaactataatatttgccctctgccatttcgtttgagcccggataaactatccgctggagtctct 1581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 22289388 - 22289217
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| |||||||| | |||||||||||||| ||| |||||||| |||||| ||| |||| || ||||  || | |||||  ||| ||| ||||||||    
T  22289388 ggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggcatcgagtaa 22289289  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||| |   ||||||||||||||||||| |||||||| || |||||||| || |||| |||||| ||||||||    
T  22289288 ggcaaccacctccccctccaaaactgtcatatttgctcgttgccatttcgtctgagtccgaatgaattgccc 22289217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 29201003 - 29201160
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||| ||| || ||||| ||||||||||  | | |||||||  |||| |||||  ||| | | || |||||   |  |     
T  29201003 gacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgacatcaagtaaacatgcta 29201102  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaa 219  Q
    ||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||    
T  29201103 cctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccgaataaa 29201160  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 30493658 - 30493820
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||  ||| |||||||| |||||||||  |||  |||||||   ||| || ||  ||| | | || |||||||||| ||    
T  30493658 gacgatagagcttgcactagagtaattgagtcggactcgaagacaacctggtctcatctgttcatatcagctaagtgaacgacatcaagtaaggctactg 30493757  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||||| ||||||||||| ||| ||| | |||||||||| ||||||||| || ||||||||||    
T  30493758 cctcccc-tccaaaactgtcatacttgtctgctgccatttcgtttgagcctgagtaaattgccc 30493820  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 17877471 - 17877393
Alignment:
Q  138 gaagggcctcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaat 216  Q
    ||||||||| ||||||||||| | ||||||||||||| ||||| |||||| |||||||| |||| |||||||| |||||    
T  17877471 gaagggccttgagtaaggctacttcctccccctccaatactgtcatatttccccgctgcgatttcgtttgagcacgaat 17877393  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 3275162 - 3275112
Alignment:
Q  73 ttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtt 123  Q
    |||||||||||||| ||| |||||||| |||||||||||||||||| ||||    
T  3275162 ttgcactagagtagctgagtcggactcgaagacaacccagtcctatatgtt 3275112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 3601724 - 3601683
Alignment:
Q  138 gaagggcctcgagtaaggctagtgcctccccctccaaaactg 179  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  3601724 gaagggcctcgagtaaggctaccacctccccctccaaaactg 3601683  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 30824599 - 30824681
Alignment:
Q  138 gaagggcctcgagtaaggctagtgcctccccctccaaaactgttatatttgcccgctg-ccattttgtttgagcccgaataaatt 221  Q
    ||||||||||||||||||||| |||||  |||| ||||||||| ||||||  |||||| |  |||| ||| ||||||||||||||    
T  30824599 gaagggcctcgagtaaggctactgcct--cccttcaaaactgtcatatttatccgctgtctttttttttttagcccgaataaatt 30824681  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 3601791 - 3601743
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaaccc 110  Q
    ||||||| || |||||||||||||||||| |||||||| || |||||||    
T  3601791 gacgataaagcttgcactagagtagatgagtcggactcgaaaacaaccc 3601743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 34578437 - 34578489
Alignment:
Q  173 aaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    |||||||| |||||||| || || ||||| || ||||||||||||||||||||    
T  34578437 aaaactgtcatatttgctcgttgtcatttcgtctgagcccgaataaattgccc 34578489  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 14680308 - 14680136
Alignment:
Q  55 gcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaag 154  Q
    |||||| || ||||||| ||||| ||||||||| || ||||| ||||||||||| | || | ||||||||||||| ||| |  |||||||||||||||||    
T  14680308 gcccggagatgatagagcttgcaatagagtagacgagtcggaatcaaagacaactcggttccatctgtttgcatcagcagagtgaagggcctcgagtaag 14680209  T
Q  155 gctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgc 227  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||  ||||||||  ||||||||||||||    
T  14680208 gctactgcctccccctccaatactgtcatattttcccgctgccatttcatttgagccataataaattgcccgc 14680136  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 15606042 - 15606205
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||||| |||||||||||||| ||| |||||||  |||||||||| |||| || ||||  ||||  ||||  ||| ||| ||||||||||||| ||    
T  15606042 gacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggcatcgagtaaggctactg 15606141  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| ||||||    
T  15606142 cctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccgaataagttgccc 15606205  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 30802040 - 30802201
Alignment:
Q  63 acgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgc 162  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||||||| ||||| || | ||  |||| |||||   || ||| || |||||||||| |||    
T  30802040 acgatagagcttgcactaaagtagctgaatcggactcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcatctagtaaggctactgc 30802139  T
Q  163 ctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcc 224  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  30802140 ctcccccaccaaaactgtcatatttgcccgctgccattttgtttaagcccgaataaattgcc 30802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 29368098 - 29368276
Alignment:
Q  56 cccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaagg 155  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||| || |||     |||| |||| || ||||| |||||  ||||||||||||||||||    
T  29368098 cccggagacgatagagcttgcactatagtagatgagtcggactcgaaaacagttaggtcccatctattagcatcagcaaagtgaagggcctcgagtaagg 29368197  T
Q  156 ctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgcccgctagagtctc 236  Q
     || ||||||||||||||||||||| ||||||  ||||||||||||  ||||||  ||||||||||| || | ||||||||    
T  29368198 atattgcctccccctccaaaactgtcatatttatccgctgccatttcttttgag--cgaataaattgtccacgagagtctc 29368276  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 15053223 - 15053383
Alignment:
Q  62 gacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtg 161  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||||  |||  || | ||  | || ||||  |||| ||| ||||||||||||| ||    
T  15053223 gacgatagcgtttgcactagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggcatcgagtaaggctactg 15053322  T
Q  162 cctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    ||||||||||||| ||| | |||||| ||||||| ||| ||||||||||||||||||||||    
T  15053323 cctccccctccaacactatcatatttacccgctgtcatcttgtttgagcccgaataaattg 15053383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 28107191 - 28107118
Alignment:
Q  149 agtaaggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaattg 222  Q
    |||||||||| ||||||||||||||||||||| |||| || |||||||||||| ||||||||| ||||||||||    
T  28107191 agtaaggctactgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctgaataaattg 28107118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 11731709 - 11731873
Alignment:
Q  54 ggcccggggacgatagagtttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaa 153  Q
    ||||||| ||| |||||| |||||||| | |  | || |||||||| |||||||||   |||||| ||||  |||| |||||  |||| | ||||||  |    
T  11731709 ggcccggagacaatagagcttgcactatattgaaagagtcggactcgaagacaacctgttcctatatgttctcatcagcaaagtgaagagtctcgag--a 11731806  T
Q  154 ggctagtgcctccccctccaaaactgttatatttgcccgctgccattttgtttgagcccgaataaatt 221  Q
    ||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  11731807 ggctgctgcctcccc-tccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 314 - 162
Alignment:
Q  73 ttgcactagagtagatgaatcggactcaaagacaacccagtcctatctgtttgcatccgcaaaacgaagggcctcgagtaaggctagtgcctccccctcc 172  Q
    |||||||||||||| ||| |||||||| |||||||||| |||| || | ||  || | |||||  ||| ||| ||||||||||| | |||||||||||||    
T  314 ttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctcc 215  T
Q  173 aaaactgttatatttgcccgctgccattttgtttgagcccgaataaattgccc 225  Q
     ||||||| |||||||| || || ||||| |||||||||||||| ||||||||    
T  214 caaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgccc 162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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