View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0166_low_6 (Length: 251)
Name: NF0166_low_6
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10838633 - 10838391
Alignment:
| Q |
1 |
atttactgaagagaggatgagaagtataatgaatgagatcaaatgaatattgcaaattaaatgaagaaaggtgagatatatatgtttataaacgaagctt |
100 |
Q |
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| T |
10838633 |
atttactgaagagaggatgagaagtataatgaatgagatcaaatgaatattgcaaattaaatgaagaaatgtgagatatatatgtttataaacgaagctt |
10838534 |
T |
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| Q |
101 |
taaatagaaaagccataaataataagagaagcatgcatgaggatgaaataaataggaaagtgtagtgatagagtgggaaacaaaagtggtcttttcactt |
200 |
Q |
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| T |
10838533 |
taaatagaaaagccataaataataagagaagcatgcatgaggatgaaataaataggaaagtgtagtgatagagtgggaaacaaaagtggtcttttcactt |
10838434 |
T |
|
| Q |
201 |
gtcactttaaactttaaataaataattcagattccttcatctc |
243 |
Q |
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| T |
10838433 |
gtcactttaaactttaaataaataattcagattcattcatctc |
10838391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 10870256 - 10870219
Alignment:
| Q |
37 |
gatcaaatgaatattgcaaattaaatgaagaaaggtga |
74 |
Q |
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| T |
10870256 |
gatcaaattaatatttcaaattaaatgaagaaaggtga |
10870219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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