View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0166_low_7 (Length: 251)
Name: NF0166_low_7
Description: NF0166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0166_low_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 43 - 251
Target Start/End: Complemental strand, 10838842 - 10838634
Alignment:
| Q |
43 |
ttaatttgttattcttttttacagtatttaatttgttaatatttaaaatgctacaagttgaagggcaagttatattatgtttgctctctttgttttcaaa |
142 |
Q |
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| T |
10838842 |
ttaatttgttattcttttttacagtatttaatttgttaatatttaaaatgctacaagttgaagggcaagttatattatgtttgctctctttgttttcaaa |
10838743 |
T |
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| Q |
143 |
tattttcgtaatcaaattaaataaatagatatataagttttgaaagaacaaacctcactatttcgaaatggatgtccataagttttgatctacataactt |
242 |
Q |
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| T |
10838742 |
tattttcgtaatcaaattaaataaatagatatataagttttgaaagaaccaacctcactatttcgaaatggatggccataagttttgatctacataactt |
10838643 |
T |
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| Q |
243 |
attgatcat |
251 |
Q |
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| T |
10838642 |
attgatcat |
10838634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 10870356 - 10870313
Alignment:
| Q |
158 |
attaaataaatagatatataagttttgaaagaacaaacctcact |
201 |
Q |
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| T |
10870356 |
attaaataaatagatatataagttttgaaggaacaaacctcact |
10870313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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