View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0167_low_1 (Length: 206)
Name: NF0167_low_1
Description: NF0167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0167_low_1 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 34704790 - 34704640
Alignment:
| Q |
57 |
ttcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcct-aggctcaactttcatgcatttgagcttcatc |
155 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
34704790 |
ttcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcacc |
34704691 |
T |
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| Q |
156 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34704690 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
34704640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 28548411 - 28548561
Alignment:
| Q |
57 |
ttcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcct-aggctcaactttcatgcatttgagcttcatc |
155 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
28548411 |
ttcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcacc |
28548510 |
T |
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| Q |
156 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28548511 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
28548561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 41867999 - 41867849
Alignment:
| Q |
57 |
ttcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcct-aggctcaactttcatgcatttgagcttcatc |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
41867999 |
ttcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcacc |
41867900 |
T |
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| Q |
156 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41867899 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
41867849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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