View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169-INSERTION4 (Length: 498)
Name: NF0169-INSERTION4
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169-INSERTION4 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 344
Target Start/End: Original strand, 26748218 - 26748527
Alignment:
| Q |
31 |
ctctagctatgtatctcttttggctttaaattaaactatcacttgtgtcattaaatgccaccctatacttaactctgtataattttgtgtgtttgttctt |
130 |
Q |
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| T |
26748218 |
ctctagctatgtatctcttttggctttaaattaaactatcacttgtgtcattaa-tgccactctatacttaactctgtataattttgtg--tttgttctt |
26748314 |
T |
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| Q |
131 |
gctgtagtatcatatatatcttttacgataccgaacttacatgtttaggtatcaataaaccaaaactttgaagtattaaatatatgtgaaaaagaattca |
230 |
Q |
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| T |
26748315 |
gctgtagtaccatatatatcttttacgataccgaacttacatgtttaggtatcaataaaccaaaactttgaagtattaaatatatgtgaaaaagaatcca |
26748414 |
T |
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| Q |
231 |
cttatagatattgtgtaacatctactttttaatctaatatgagacnnnnnnnnnnnncctgacgttgaatatgagactcttcttcacacttaacatacca |
330 |
Q |
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| T |
26748415 |
cttatagatattgtgtaacatctactttttaatctaatataagactctattttttct-ttgacgttgaatataagactcttcttcacacttaacatacca |
26748513 |
T |
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| Q |
331 |
atctttccctcaac |
344 |
Q |
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|||||||||||||| |
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| T |
26748514 |
atctttccctcaac |
26748527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 399 - 491
Target Start/End: Original strand, 26748535 - 26748627
Alignment:
| Q |
399 |
ctacatacatttgctgcaacacctttcaaatatatagacattcgttgatagctaaagttttgttgagactggccgttgacaaacatcatctat |
491 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26748535 |
ctacatacatttgctgcaacacccttcaaatatatagacattcgttgatagctaaagttttgttgagactggccattgacaaacatcatctat |
26748627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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