View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169-INSERTION5 (Length: 365)
Name: NF0169-INSERTION5
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169-INSERTION5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 37 - 365
Target Start/End: Original strand, 38508559 - 38508887
Alignment:
| Q |
37 |
acaaatcaaatcaaagtgataaaggttaaatctcactagatcatggcaaacacttataatacctcgtcacatattagtcaaacaaattcccaagtgcatt |
136 |
Q |
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| T |
38508559 |
acaaatcaaatcaaagtgataaaggtcaaatctcactagatcatggcaaacacttataatacctcgtcacatattagtcaaacaaattcccaagtgcatt |
38508658 |
T |
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| Q |
137 |
tatctttccacatgcaattggcaacatctccttttgattttgattttgttgcctttgaggaatatcttggtaagatgacatagttgattcatcacttcct |
236 |
Q |
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| T |
38508659 |
tatctttccacatgcaattggcaacatctccttttgattttgattttgttgcctttgaggaatatcttggtaagatgacatagttgattcatcacttcct |
38508758 |
T |
|
| Q |
237 |
tcaatcactccttgctttctcatatattccaatttgtcttggaagagataaatcaatccaatgaaaaagacttccaccgtaaaaagtatagtccaaaaca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38508759 |
tcaatcactccttgctttctcatatattccaatttgtcttggaagagataaatcaatccaatgaaaaagacttccaccgtaaaaagtatagtccaaaaca |
38508858 |
T |
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| Q |
337 |
ttgtgctttttaaggttctcttgtgatat |
365 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38508859 |
ttgtgctttttaaggttctcttgtgatat |
38508887 |
T |
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