View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169-INSERTION6 (Length: 357)
Name: NF0169-INSERTION6
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169-INSERTION6 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 38075096 - 38074744
Alignment:
| Q |
8 |
cgtagttggtgggtactgagatttgacaaaaatatcaatctagctgcggtgcca------ccacctccactccacacactcaccacatgatnnnnnnnnn |
101 |
Q |
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| T |
38075096 |
cgtagttggtgggt-ctgagatttgacaaaaatatcaatctagctgcggtgccagtgccaccacctccactccacacactcaccacatgatgaaaaaaaa |
38074998 |
T |
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| Q |
102 |
nnnggagagtgacaagttttt-agatccaattttattcatggaacgtgctgctgtcccattctgggccaattaaagtgtcggttcacatgattatatgct |
200 |
Q |
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| T |
38074997 |
aa-ggagagtgacaagttttttagatccaattt-attcatggaacgtgctgctgtcccattctgggccaattaaagtgtcggttcacatgattatatgct |
38074900 |
T |
|
| Q |
201 |
catgcttgtcggtgatctactcataaaataaaggccaattcatcaaaattatgtttaatcatgaaaccaaaaacaaagtttatatcaacattgtattaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38074899 |
catgcttgtcggtgatctactcataaaataaaggccaattcatcaaaattatgtttaatcatgaaaccaaaaacaaagtttatatcaacattgtattaga |
38074800 |
T |
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| Q |
301 |
aaaaaggaaattttatttggtcgcaacttcaaattaagtgtatatttggtactcat |
356 |
Q |
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| T |
38074799 |
aaaaaggaaattttatttggtcgcaacttcaaattaagtgtatatttggtactcat |
38074744 |
T |
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