View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169-INSERTION7 (Length: 729)
Name: NF0169-INSERTION7
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169-INSERTION7 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 729
Target Start/End: Original strand, 17830881 - 17831600
Alignment:
| Q |
8 |
aaattagccatagcaatgggcctataatgttccaccctaactgcatttgaatgtttaggaatgaggatcaaggtattagcattgaagtttgggagaatcc |
107 |
Q |
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| T |
17830881 |
aaattagccatagcaatgggcctataatattccaccctaactgcatttgaatgtttaggaatgaggatcaaggtattagcattgaagtttgggagaatcc |
17830980 |
T |
|
| Q |
108 |
aacctgacttaaaaaactgcaaaatagcatcagtgaaatctttttggataatgtcccaat-ggtttggaaaaagaagcctccaaactcatctgggccagg |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
17830981 |
aacctgacttaaaaaactgcaaaatagcatcagtgaaatctttttggataatgtcccaataggtttggaaaaacaagcctccaaacccatctgggccagg |
17831080 |
T |
|
| Q |
207 |
tgccccatatttgttaagactgaaaactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttgga |
306 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831081 |
tgccccatatttgttaagactgaaaactgttgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttgga |
17831180 |
T |
|
| Q |
307 |
ataacttcttcgacaagaacctgttcctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831181 |
ataacttcttcgacaagaacctgttcctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcac |
17831280 |
T |
|
| Q |
407 |
tgatcaaatcctcaccaactctcaaacaagtaannnnnnnngtcttgtttttgatttgtgaaagtctgtgaaaatagccggtgtttctatcaccctccaa |
506 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17831281 |
tgatcaaatcctcaccaactctcaaactagtaattttttttgtcttatttttgatttgtgaaagtctgtgaaaatagccagtgtttctatcaccctccaa |
17831380 |
T |
|
| Q |
507 |
atgccacttaactttagatttttctctccaaaagctttcttgtctctctaaggctatgtttaggtcaatttgggcggtttgttcgagatttagaagatta |
606 |
Q |
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| T |
17831381 |
atgccacttaactttagatttttctctccaaaagctttcttgtctctctaaggctatgtttaggtcaatttgggcggtttgttcgagatttagaagatta |
17831480 |
T |
|
| Q |
607 |
tatgttgggccagtagtttgaatttggttttggatcatatggttaagggtgacctcggcattattaacatgctggtggacatttccatatacttctttgt |
706 |
Q |
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| T |
17831481 |
tctgttgggccagtagtttgaatttggttttgg---atatggttaagggtgacctcggcattattaacatgctggtggacattttcatatacttctttgt |
17831577 |
T |
|
| Q |
707 |
tccaaacttttagctttgttttc |
729 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
17831578 |
tccaaacttttagctttgttttc |
17831600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 74 - 641
Target Start/End: Original strand, 11179013 - 11179581
Alignment:
| Q |
74 |
atcaaggtattagcattgaagtttgggagaatccaacctgacttaaaaaactgcaaaatagcatcagtgaaatctttttggataatgtcccaatg-gttt |
172 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||| ||| |||||||| || || ||||| | |||| |
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| T |
11179013 |
atcagggtattagcattgaagtttggaagaatccagcctgttacaaaaaactgaatgatagcatcagcgaagtctttttgaattatctcccattatgttt |
11179112 |
T |
|
| Q |
173 |
ggaaaaagaagcctccaaactcatctgggccaggtgccccatatttgttaagactgaaaactgctgctttgatctctgcttgtgtcgggagcatggtaag |
272 |
Q |
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| T |
11179113 |
gaaaaaagaaggcaccaaagccatcaggtccaggtgccccatctttatcaagattaaagactgcagctttgatctcagcatgtgtggggagcatagttag |
11179212 |
T |
|
| Q |
273 |
caatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgttcctgcaaaacatggttagtacaaaataagtttttgaaataa |
372 |
Q |
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| T |
11179213 |
cagattattggtgttgtcgtcaatcaaatttggaatgacctcttccacaagcaatgaatcctgcaaaatagggttagtacaaaacaaattttcaaaataa |
11179312 |
T |
|
| Q |
373 |
tcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactctcaaacaagtaannnnnnnngtcttgtttttgatttgtgaaagtc |
472 |
Q |
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| T |
11179313 |
ttgacaatgtgttccgaaatttgattagtatctgtaagtaaattctcatcaactctcaagctagtaataagctttgttttgtttttgatttgagaaagtc |
11179412 |
T |
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| Q |
473 |
tgtgaaaatagccggtgtttctatcaccctccaaatgccacttaactttagatttttctctccaaaagctttcttgtctctctaaggctatgtttaggtc |
572 |
Q |
| |
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|||||||||| ||||| |||||||| |||| |||||||||| |||||| ||| |||||| | || |||||||||||||| | ||||||||| | ||| |
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| T |
11179413 |
tgtgaaaatatgatgtgttcctatcaccttccacatgccacttagctttagctttctctctctataaactttcttgtctctcaagggctatgttcatgtc |
11179512 |
T |
|
| Q |
573 |
aatttgggcggtttgttcgagatttagaagattatatgttgggccagtagtttgaatttggttttggat |
641 |
Q |
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|||| || ||| || || ||||||||| ||| ||| ||||||| |||||||| |||||||||| |
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| T |
11179513 |
gttttgtgcacttttctcaaggtttagaagagtatctgtggggccagaggtttgaatgcggttttggat |
11179581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 187 - 359
Target Start/End: Complemental strand, 28714330 - 28714158
Alignment:
| Q |
187 |
ccaaactcatctgggccaggtgccccatatttgttaagactgaaaactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgt |
286 |
Q |
| |
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|||||| |||| || ||||| ||||||| ||| || ||| ||||||||||||||||||| || | ||||| || ||||| || |||| | ||| |||| |
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| T |
28714330 |
ccaaacccatcgggtccaggggccccatctttattgagattgaaaactgctgctttgatttcatcatgtgtaggtagcatagtgagcatctggttggtgt |
28714231 |
T |
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| Q |
287 |
tgtcatcaataagctttggaataacttcttcgacaagaacctgttcctgcaaaacatggttagtacaaaataa |
359 |
Q |
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| T |
28714230 |
tgtcttcaacaagtttgggaataacttcttctgcaagcaagtgttcctgcaataaagggttagtacaaaataa |
28714158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 16488004 - 16487790
Alignment:
| Q |
146 |
tctttttggataatgtcccaatg-gtttggaaaaagaagcctccaaactcatctgggccaggtgccccatatttgttaagactgaaaactgctgctttga |
244 |
Q |
| |
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||||| |||||||| ||||||| ||||| || ||||| | |||||| |||| || ||| | ||||||| ||| || ||| |||||||||||||||||| |
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| T |
16488004 |
tctttatggataatttcccaataagtttgaaagaagaatgccccaaacccatcgggtccatgggccccatctttattgagattgaaaactgctgctttga |
16487905 |
T |
|
| Q |
245 |
tctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgttcctgcaaaacatg |
344 |
Q |
| |
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| || | ||||| || ||||| || |||| | ||| |||||||| |||| ||| || |||||||||||||| |||| | ||||||||||| | | | |
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| T |
16487904 |
tttcatcatgtgtaggtagcatagtgagcatctggttggtgttgtcttcaacaagtttgggaataacttcttctgcaagcaagtgttcctgcaataaagg |
16487805 |
T |
|
| Q |
345 |
gttagtacaaaataa |
359 |
Q |
| |
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||||||||||||||| |
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| T |
16487804 |
gttagtacaaaataa |
16487790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 1325 - 1370
Alignment:
| Q |
320 |
caagaacctgttcctgcaaaacatggttagtacaaaataagttttt |
365 |
Q |
| |
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|||| ||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
1325 |
caagtacctgatcctgcaaaacaaggttagtacaaaacaagttttt |
1370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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