View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0169_high_1 (Length: 478)

Name: NF0169_high_1
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0169_high_1
NF0169_high_1
[»] chr8 (2 HSPs)
chr8 (26-468)||(30047777-30048218)
chr8 (26-462)||(7160140-7160575)
[»] chr7 (2 HSPs)
chr7 (26-468)||(39950958-39951399)
chr7 (26-468)||(26219692-26220133)
[»] chr5 (1 HSPs)
chr5 (26-468)||(197797-198238)
[»] chr4 (1 HSPs)
chr4 (26-468)||(3944031-3944472)
[»] chr3 (1 HSPs)
chr3 (26-462)||(22363665-22364100)


Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 26 - 468
Target Start/End: Complemental strand, 30048218 - 30047777
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048218 atcaattccagccatttgagaatatcctttcacaacaagccttgctttgtgtttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 30048119  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048118 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 30048019  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 325  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048018 ttatcaatgaagcttcttcaaaactagaaggttcattctcaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 30047919  T
Q  326 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcattttc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  30047918 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcaga-ttttgtacttctttgaacctcatcattttc 30047820  T
Q  426 ccaatcccaatatgcattttcatcaacatcaatgtctgtgctg 468  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  30047819 ccaatcccaatatgcattttcatcaacatcaatgtctctgctg 30047777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 26 - 462
Target Start/End: Complemental strand, 7160575 - 7160140
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7160575 atcaattccagccatttgagaatatcctttcacaacaagccttgctttgtgtttgtgaatggagccatcaggatttaacttggttttgtaaacccattta 7160476  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7160475 actcctatcacatttttatctttaggtctttgagtgagttctcatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattatg 7160376  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 325  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7160375 ttattaatgaagcttcttcaaaactagaaggttaattcacaacaaaattgcaattttcataaacttcagccagagatttgctctttagaattggggaatc 7160276  T
Q  326 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcattttc 425  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||     
T  7160275 agattcagctatctgattttcatcttcatttgttgtgtcctcttgtttgtcatgagcactttcagcaga-ttctgtacttctttgaacctcatcattttt 7160177  T
Q  426 ccaatcccaatatgcattttcatcaacatcaatgtct 462  Q
    |||||||||||||||||||||||||||||||||||||    
T  7160176 ccaatcccaatatgcattttcatcaacatcaatgtct 7160140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 26 - 468
Target Start/End: Original strand, 39950958 - 39951399
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39950958 atcaattccagccatttgagaatatcctttcacaacaagccttgctttgtgtttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 39951057  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39951058 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 39951157  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39951158 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 39951257  T
Q  326 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcattttc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  39951258 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcaga-ttttgtacttctttgaacctcataattttc 39951356  T
Q  426 ccaatcccaatatgcattttcatcaacatcaatgtctgtgctg 468  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  39951357 ccaatcccaatatgcattttcatcaacatcaatgtctctgctg 39951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 468
Target Start/End: Original strand, 26219692 - 26220133
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  26219692 atcaattccagtcatttgagaatatcctttcacagcaagccttgctttgtgtttgtgaatggaaccatcaggatttaacttggttctataaacccattta 26219791  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||  |||| ||||||||||| || ||||||  |||||||||||| ||||||||||||||||| |  || ||||||||||||||| |||||||||||||||    
T  26219792 acatctattacatttttatcattgggtcttgaagtgagttcccaagtaccatttttattaatagttagtagctcctccttcatttcatctttccattctg 26219891  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaa-ttttcataaacttcagacagagatttgctctttagaattggggaat 324  Q
    ||| ||||||| ||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  26219892 ttagcaatgaaacttcttc-aaactagaaggcttattcacaacaaaattgcaatttttcataaacttcagccagagatttgctccttagaattggggaat 26219990  T
Q  325 cagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcatttt 424  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||       |||  ||| ||||||||||||||    
T  26219991 caaattcagctatctgattttcatcttcatttgttatgtgctcttgtttgtcaggagcaatttcagcaga-ttttgtactaatttaaacctcatcatttt 26220089  T
Q  425 cccaatcccaatatgcattttcatcaacatcaatgtctgtgctg 468  Q
    | |||||| ||||||||||||||||||||| ||| ||| |||||    
T  26220090 ctcaatccgaatatgcattttcatcaacattaatatctctgctg 26220133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 26 - 468
Target Start/End: Original strand, 197797 - 198238
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  197797 atcaattccagccatttgagaatatcctttcacaacaagccttgctttgtgtttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 197896  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197897 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 197996  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 325  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197997 ttatcaatgaagcttcttcaaaactagaaggttcattctcaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 198096  T
Q  326 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcattttc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  198097 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcaga-ttttgtacttctttgaacctcatcattttc 198195  T
Q  426 ccaatcccaatatgcattttcatcaacatcaatgtctgtgctg 468  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  198196 ccaatcccaatatgcattttcatcaacatcaatgtctctgctg 198238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 26 - 468
Target Start/End: Complemental strand, 3944472 - 3944031
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3944472 atcaattccagccatttgagaatatcctttcacaacaagccttgctttgtgtttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 3944373  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3944372 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 3944273  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 325  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3944272 ttatcaatgaagcttcttcaaaactagaaggttcattctcaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattagggaatc 3944173  T
Q  326 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcattttc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  3944172 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcaga-ttttgtacttctttgaacctcatcattttc 3944074  T
Q  426 ccaatcccaatatgcattttcatcaacatcaatgtctgtgctg 468  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  3944073 ccaatcccaatatgcattttcatcaacatcaatgtctctgctg 3944031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 26 - 462
Target Start/End: Complemental strand, 22364100 - 22363665
Alignment:
Q  26 atcaattccagccatttgagaatatcttttcacaacaagccttgctttgtatttgtgaatggagccatcaggatttaacttggttctgtaaacccattta 125  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22364100 atcaattctagccatttgagaatatcctttcacaacaagccttgttttgtgtttgtgaatggatccatcaggatttaacttggttctgtaaacccattta 22364001  T
Q  126 actcctatcacatttttatctttaggtctttgagtgagttcccatgtaccatttttattaatggccagcagctcctccttcattgcatctttccattctg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22364000 actcctatcacatttttatctttaggtctttgagtgagttcccatgtgccatttttattaatggccagcagctcctccttcattgcatctttccattctg 22363901  T
Q  226 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagacagagatttgctctttagaattggggaatc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22363900 ttatcaatgaagcttcttcaaaactagaaggttcattcacaacaaaattgcaattttcataaacttcagccagagatttgctctttagaattggggaatc 22363801  T
Q  326 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagannnnnnnacttctttgaacctcatcattttc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  22363800 agattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcaga-ttttgtacttctttgaacctcatcattttc 22363702  T
Q  426 ccaatcccaatatgcattttcatcaacatcaatgtct 462  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22363701 ccaatcccaatatacattttcatcaacatcaatgtct 22363665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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