View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0169_high_3 (Length: 421)

Name: NF0169_high_3
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0169_high_3
NF0169_high_3
[»] chr2 (17 HSPs)
chr2 (1-154)||(28741543-28741696)
chr2 (5-141)||(28733364-28733500)
chr2 (250-326)||(28741301-28741377)
chr2 (39-148)||(28670874-28670983)
chr2 (204-325)||(19616340-19616461)
chr2 (39-148)||(28642291-28642400)
chr2 (5-90)||(28717744-28717829)
chr2 (39-148)||(28675018-28675127)
chr2 (39-148)||(28691494-28691603)
chr2 (39-148)||(28651152-28651261)
chr2 (208-325)||(15342279-15342397)
chr2 (39-148)||(28696379-28696488)
chr2 (205-288)||(21626586-21626670)
chr2 (258-325)||(28719057-28719124)
chr2 (153-188)||(28741387-28741422)
chr2 (251-326)||(29800419-29800494)
chr2 (109-147)||(28717704-28717742)
[»] chr4 (4 HSPs)
chr4 (204-325)||(30040750-30040872)
chr4 (208-325)||(11420924-11421042)
chr4 (204-288)||(19365423-19365508)
chr4 (220-311)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (222-288)||(23846700-23846767)
chr6 (204-325)||(20736604-20736726)
chr6 (204-325)||(21994492-21994614)
chr6 (204-318)||(4073480-4073595)
chr6 (204-325)||(8612820-8612941)
chr6 (252-325)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (208-325)||(13225-13343)
[»] scaffold0136 (1 HSPs)
scaffold0136 (205-326)||(8636-8758)
[»] chr7 (11 HSPs)
chr7 (204-325)||(3587813-3587935)
chr7 (205-323)||(15170307-15170428)
chr7 (204-325)||(19393700-19393822)
chr7 (204-325)||(28130465-28130587)
chr7 (204-288)||(18259437-18259522)
chr7 (204-325)||(47167135-47167257)
chr7 (204-288)||(2935935-2936020)
chr7 (217-293)||(19388469-19388546)
chr7 (220-288)||(31190756-31190825)
chr7 (204-325)||(15999886-16000008)
chr7 (204-325)||(24443603-24443724)
[»] chr3 (4 HSPs)
chr3 (204-323)||(15526658-15526777)
chr3 (204-323)||(11787491-11787611)
chr3 (204-323)||(25979006-25979126)
chr3 (204-274)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (204-326)||(20100518-20100641)
chr5 (204-325)||(7865710-7865831)
chr5 (204-325)||(12765270-12765391)
chr5 (204-325)||(5097555-5097677)
chr5 (204-325)||(12704154-12704275)
chr5 (204-325)||(39535368-39535490)
chr5 (204-325)||(9812013-9812134)
chr5 (205-325)||(31652060-31652181)
chr5 (204-326)||(26245006-26245129)
chr5 (204-288)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (205-325)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (204-324)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (204-325)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (204-323)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (217-325)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (204-288)||(8727568-8727653)
chr1 (206-325)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (204-323)||(18835254-18835374)
chr8 (204-325)||(22659770-22659894)
chr8 (204-326)||(20539672-20539798)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 28741696 - 28741543
Alignment:
Q  1 ttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741696 ttggatatcaatcatggatgaatcacaattgacacataattgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatc 28741597  T
Q  101 cctagaattgatttaccaggaatccatgatgatcctgttttgagagatacagtt 154  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28741596 cgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagtt 28741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 28733500 - 28733364
Alignment:
Q  5 atatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatcccta 104  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  28733500 atatcaatcatggatgaatcccaattgacacgtaattgtggataatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatcccta 28733401  T
Q  105 gaattgatttaccaggaatccatgatgatcctgtttt 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  28733400 gaattgatttaccaggaatccatgatgatcctgtttt 28733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 28741377 - 28741301
Alignment:
Q  250 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28741377 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtatgtagactgatgat 28741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 28670983 - 28670874
Alignment:
Q  39 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 138  Q
    |||||| | |||||||||||||  ||| |||| | ||||||| |||||||||| ||||| |||||| |||||| ||| ||||||||||||||||||||||    
T  28670983 attgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccctacaattgacttaacaggaatccatgatgatcctgt 28670884  T
Q  139 tttgagagat 148  Q
    ||||||||||    
T  28670883 tttgagagat 28670874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 19616340 - 19616461
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||| | || |||   ||    
T  19616340 tgacttaatcataagattacattaacataaagaacactattcttaaatgtatttgtagtcaagctttaatatgaattgggataata-ataagcgtcgaga 19616438  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  19616439 ctattatgtatgtagactgatga 19616461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 28642400 - 28642291
Alignment:
Q  39 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 138  Q
    |||||| | |||||| |||||| ||||||||| | ||||||| |||||||||| | |||||||||| |||||| |||  ||||||||||||||||||||     
T  28642400 attgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccctacaattgacttaaaaggaatccatgatgatcctgc 28642301  T
Q  139 tttgagagat 148  Q
    ||||||||||    
T  28642300 tttgagagat 28642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 28717829 - 28717744
Alignment:
Q  5 atatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaa 90  Q
    |||| ||||||||||||||| ||||| || |||||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||    
T  28717829 atattaatcatggatgaatctcaattaacgcataattgtggagaatctaataccaatgatgtttcagtcagtgaatcaaattcaaa 28717744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 28675127 - 28675018
Alignment:
Q  39 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 138  Q
    |||||| | ||||||||||||| ||| | ||| ||| ||||| ||||| |||| |||| ||||||| |||||| ||| |||||||||| ||||||||| |    
T  28675127 attgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccctacaattgacttaacaggaatccacgatgatcctct 28675028  T
Q  139 tttgagagat 148  Q
    ||||||||||    
T  28675027 tttgagagat 28675018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 28691603 - 28691494
Alignment:
Q  39 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 138  Q
    |||||| | |||||| ||| || ||| ||||| ||||||| | |||||||||  |||||||||||| ||||||  || |||||||||||||||||| |||    
T  28691603 attgtgaacaatctagtatgaatgatttttcagtcaatgattcaaattcaaatgttagtatccctacaattgacctaacaggaatccatgatgatcttgt 28691504  T
Q  139 tttgagagat 148  Q
    ||||||||||    
T  28691503 tttgagagat 28691494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 28651261 - 28651152
Alignment:
Q  39 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 138  Q
    |||||| | ||||| |||||||| ||| | ||  || ||||| |||| ||||| |||||||||||| |||||| |||  ||||||||||||||||||||     
T  28651261 attgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgc 28651162  T
Q  139 tttgagagat 148  Q
    ||||||||||    
T  28651161 tttgagagat 28651152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 15342397 - 15342279
Alignment:
Q  208 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 306  Q
    ||||| || ||||||||||| |||||| |||||||||||| ||  ||| | |||||||  ||||||||||||||||||||||  ||| |||   ||||||    
T  15342397 ttaatcatgagattacattaccataaagaacactattctttaatgtatatgtagtcaagatttaatataaattgggataataataaagcgtggagactat 15342298  T
Q  307 tatgtgtgtagactgatga 325  Q
    ||||| |||||| ||||||    
T  15342297 tatgtatgtagattgatga 15342279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 28696488 - 28696379
Alignment:
Q  39 attgtggagaatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgt 138  Q
    |||||| | |||||| |||||| ||||||||| ||||||| | |||||||||| | ||||||||   ||||||  || ||||||||||| |||||| |||    
T  28696488 attgtgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgt 28696389  T
Q  139 tttgagagat 148  Q
    ||||| ||||    
T  28696388 tttgaaagat 28696379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 21626586 - 21626670
Alignment:
Q  205 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    |||||||| || | |||||||||||||||| |||| ||||||||||| ||||   ||||||| ||||||||||| ||||||||||    
T  21626586 gacttaatcatgacattacattaacataaagaacaatattcttaaaagtatccgaagtcaaattttaatataaaatgggataata 21626670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 28719124 - 28719057
Alignment:
Q  258 tagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 325  Q
    |||||||  |||| ||||||||| |||||||  ||||||||  ||||||||||| |||||||||||||    
T  28719124 tagtcaagttttagtataaattgagataataataaaacgtagagactattatgtatgtagactgatga 28719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 28741422 - 28741387
Alignment:
Q  153 ttattatgcttgttgtaagattaataaagagatagt 188  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28741422 ttattatacttgttgtaagattaataaagagatagt 28741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 29800419 - 29800494
Alignment:
Q  251 atatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 326  Q
    |||| |||| |||| |||||||| ||||||||||||||  ||| || |  ||||||||||| ||||||||||||||    
T  29800419 atatatatattcaagctttaatacaaattgggataataataaagcggaaagactattatgtatgtagactgatgat 29800494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 28717742 - 28717704
Alignment:
Q  109 tgatttaccaggaatccatgatgatcctgttttgagaga 147  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  28717742 tgatttactaggaatccatgatggtcctgttttgagaga 28717704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 30040872 - 30040750
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||||| |||||||||||||  ||| | |   ||    
T  30040872 tgacttaatcatgagattacattaacataaagaacactattcttaaatgtatctatagtcaagcgttaatatgaattgggataataataaagcatcgaga 30040773  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| | |||||||||||    
T  30040772 ctattatgtatatagactgatga 30040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 11420924 - 11421042
Alignment:
Q  208 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 306  Q
    ||||| || |||||||||||||||||| ||| |||||||||||  ||||  ||||||||||||||||| |||| ||||||||  ||| | |   ||||||    
T  11420924 ttaatcattagattacattaacataaagaacgctattcttaaatgtatccgtagtcaaactttaatatgaattaggataataataaagcttcgagactat 11421023  T
Q  307 tatgtgtgtagactgatga 325  Q
    ||||| |||||||||||||    
T  11421024 tatgtatgtagactgatga 11421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 19365423 - 19365508
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    ||||||||| || ||||||||||||| |||| ||| |||||||||||  ||||  ||||||| ||||||||||||||||| |||||    
T  19365423 tgacttaatcatgagattacattaacgtaaagaacgctattcttaaatgtatccgtagtcaagctttaatataaattggggtaata 19365508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 9537881 - 9537973
Alignment:
Q  220 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgt 311  Q
    ||||||||||||||| ||| |||||||||||  ||| | |||||||  |||||||||| ||||||||| |  |||||| || |||||||||||    
T  9537881 ttacattaacataaagaacgctattcttaaatgtatatgtagtcaatatttaatataatttgggataacaataaaacgcatagactattatgt 9537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 23846767 - 23846700
Alignment:
Q  222 acattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    ||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23846767 acatttacataaagaacactattcttaaaagtatctgtagtcaaactttaatataaattgggataata 23846700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 20736726 - 20736604
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || |||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||  || ||||||||||  ||| |||   ||    
T  20736726 tgacttaatcatgagattacattaacataaagaacattattcttaaatgtatctgtagtcaagctttaataagaactgggataataataaagcgtcgaga 20736627  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  20736626 ctattatgtatgtagactgatga 20736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 21994492 - 21994614
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||  |||| |||||| | |||||||||||||||| ||||||  ||| || |  ||    
T  21994492 tgacttaatcatgagattacattaatataaagaacactattcttaaatgtatccatagtcgagctttaatataaattggaataataataaagcgcaaaga 21994591  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||| | |||||||||||||    
T  21994592 ctattatatatgtagactgatga 21994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 4073480 - 4073595
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||||   ||| |||| ||||||||||| ||||  |||||||||||||||||||||  ||||||||  ||||||||  ||    
T  4073480 tgacttaatcatgagattacattaatggaaagaacattattcttaaaagtatccgtagtcaaactttaatataaatcaggataataataaaacgtagaga 4073579  T
Q  303 ctattatgtgtgtaga 318  Q
    ||||||||| ||||||    
T  4073580 ctattatgtttgtaga 4073595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 8612820 - 8612941
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  8612820 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 8612918  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  8612919 ctattatgtatgtagactgatga 8612941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 22560533 - 22560460
Alignment:
Q  252 tatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 325  Q
    |||| |||||||| |||||||||||||||||||||||  ||| || |  ||||||||||  ||||||| |||||    
T  22560533 tatccatagtcaagctttaatataaattgggataataataaagcgcagagactattatgcatgtagaccgatga 22560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 13343 - 13225
Alignment:
Q  208 ttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 306  Q
    ||||| || |||||||||||||||||||| || ||||||||||  |||| |||||||| ||||||||| |||||||||||||  ||| |||   ||||||    
T  13343 ttaatcatgagattacattaacataaaaaacagtattcttaaatgtatccatagtcaagctttaatattaattgggataataataaagcgtcgagactat 13244  T
Q  307 tatgtgtgtagactgatga 325  Q
    ||||| ||||||| |||||    
T  13243 tatgtatgtagaccgatga 13225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 8636 - 8758
Alignment:
Q  205 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 303  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||| | |||||||  |||||||||||||| |||| ||  ||| ||||  |||    
T  8636 gacttaatcatgagattacattaacataaagaacactattcttaaaagtatttgtagtcaagttttaatataaattgagatagtaataaagcgtagagac 8735  T
Q  304 tattatgtgtgtagactgatgat 326  Q
    || ||||| |||||| |||||||    
T  8736 taatatgtatgtagattgatgat 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 3587813 - 3587935
Alignment:
Q  204 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||| |||||||||||| |  ||||||||||   |||||||||||| |||||||||||||||||||||||  ||| ||||  ||    
T  3587813 tgacttaatcatgagattactttaacataaaaaacgttattcttaaatgaatctatagtcaagctttaatataaattgggataataataaagcgtagaga 3587912  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| | ||||| |||||    
T  3587913 ctattatgtatatagaccgatga 3587935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 15170428 - 15170307
Alignment:
Q  205 gacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatata--aattgggataatataaaaacgtattg 301  Q
    |||||||| || |||||||||||||||||||| |  |||||||||| |||| | ||||||| ||||||||||  |||||||||||||  ||| ||||  |    
T  15170428 gacttaatcatgagattacattaacataaaaaacgttattcttaaatatatttgtagtcaagctttaatatataaattgggataataataaagcgtagag 15170329  T
Q  302 actattatgtgtgtagactgat 323  Q
    |||||||| | |||||||||||    
T  15170328 actattatatatgtagactgat 15170307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 19393822 - 19393700
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || |||||||||||||||||| ||  |||||||||||  ||||| ||||||| ||||||||| | ||||||||||   ||| |||   ||    
T  19393822 tgacttaatcatgagattacattaacataaagaatgctattcttaaatgtatctgtagtcaagctttaatatgagttgggataattataaagcgtcgaga 19393723  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||| ||||    
T  19393722 ctattatgtatgtagactaatga 19393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 28130465 - 28130587
Alignment:
Q  204 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||||| | |||||||||||  ||||| ||||||| ||||||||| |||  ||||||||  ||| |||   ||    
T  28130465 tgacttaatcatgagattacattatcataaaaaacgctattcttaaatgtatctgtagtcaagctttaatatgaataaggataataataaagcgtcgaga 28130564  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||  |||||||||||||    
T  28130565 ctattatgcatgtagactgatga 28130587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 18259522 - 18259437
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    ||||||||| || ||||||||||| |||||| |||| ||||||||||  |||| |||||||| ||||||||| |||| ||||||||    
T  18259522 tgacttaatcatgagattacattatcataaagaacattattcttaaatgtatccatagtcaagctttaatatgaattaggataata 18259437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 47167257 - 47167135
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    |||||| || || ||||||||||| |||||| |||  ||||||||||  ||| | ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  47167257 tgactttatcatgagattacattatcataaagaacgttattcttaaatgtatttgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 47167158  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  47167157 ctattatgtatgtagactgatga 47167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 2935935 - 2936020
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||||  ||||||| ||||||||| ||||| |||||||    
T  2935935 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatccgtagtcaagctttaatatgaattgcgataata 2936020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 19388469 - 19388546
Alignment:
Q  217 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaa 293  Q
    ||||||||| || ||||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  19388469 agattacatcaatataaagaacactatttttaatagtatctgtagtcaagcttaaatataaattgggataataaaaaa 19388546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 31190825 - 31190756
Alignment:
Q  220 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    ||||||||||||||| |||| |||| ||||| |||||  ||||||| ||||| |||||||||||||||||    
T  31190825 ttacattaacataaataacattattattaaatatatccttagtcaagctttagtataaattgggataata 31190756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 15999886 - 16000008
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| | |||| ||| ||||| |||||  ||||  ||||||||||||||||| |||| ||||||||  ||| |||   ||    
T  15999886 tgacttaatcatgagattacattaccttaaagaacgctattattaaatgtatccttagtcaaactttaatatgaattaggataataataaagcgtcgaga 15999985  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    || |||||| || ||||||||||    
T  15999986 cttttatgtatgcagactgatga 16000008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 24443724 - 24443603
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| |  |||||||||||||||||| |||  ||||||||||  ||||  ||| ||| ||||||||||||| ||||| |||  |||  |||  ||    
T  24443724 tgacttaatcacgagattacattaacataaagaacgatattcttaaatgtatccgtagccaagctttaatataaat-gggatgataacaaagtgtaaaga 24443626  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  24443625 ctattatgtatgtagactgatga 24443603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 15526658 - 15526777
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||   || | ||||||| |||||||||||| || |||||||  ||| ||||  ||    
T  15526658 tgacttaatcatgagattacattaacataaagaacactattcttaaatgcatatgtagtcaagctttaatataaa-tgagataataataaagcgtagaga 15526756  T
Q  303 ctattatgtgtgtagactgat 323  Q
    ||||||||| |||||||||||    
T  15526757 ctattatgtttgtagactgat 15526777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 11787491 - 11787611
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| |||  ||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  11787491 tgacttaatcatgagattacattatcataaagaacgttattcttaaatgtatctgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 11787590  T
Q  303 ctattatgtgtgtagactgat 323  Q
    ||||||||| ||| |||||||    
T  11787591 ctattatgtatgttgactgat 11787611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 25979126 - 25979006
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  25979126 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 25979027  T
Q  303 ctattatgtgtgtagactgat 323  Q
    ||||||||| ||| |||||||    
T  25979026 ctattatgtatgttgactgat 25979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 28088120 - 28088192
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatat 274  Q
    ||||||||| || ||||||||||| |||||| ||||||||||||||| | |||  |||||||| |||||||||    
T  28088120 tgacttaatcatgagattacattatcataaagaacactattcttaaatagatccgtagtcaaagctttaatat 28088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 20100641 - 20100518
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||||| |||| |||  ||||||||||  |||   |||| ||||||||||||||||||||||||||  ||| |||   ||    
T  20100641 tgacttaatcatgagattacattaacgtaaataacgttattcttaaatgtattcgtagttaaactttaatataaattgggataataataaagcgtcacga 20100542  T
Q  303 ctattatgtgtgtagactgatgat 326  Q
    ||||||||| ||||||||||||||    
T  20100541 ctattatgtatgtagactgatgat 20100518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 7865831 - 7865710
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  7865831 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 7865733  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  7865732 ctattatgtatgtagactgatga 7865710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 12765391 - 12765270
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12765391 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12765293  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  12765292 ctattatgtatgtagactgatga 12765270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 5097555 - 5097677
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||| | |||||||  |||||||| |||| ||||||||  ||| |||   ||    
T  5097555 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatttgtagtcaagttttaatatgaattaggataataataaagcgtcgaga 5097654  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  5097655 ctattatgtatgtagactgatga 5097677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 12704275 - 12704154
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12704275 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12704177  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||| ||||| |||||||||||||    
T  12704176 ctactatgtatgtagactgatga 12704154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 39535368 - 39535490
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| | |||| |||  ||||||||||  ||||  || |||||||||||||| |||||||||||||  ||| |||   ||    
T  39535368 tgacttaatcatgagattacattaccttaaagaacgatattcttaaatgtatccgtactcaaactttaatatgaattgggataataataaagcgtcaaga 39535467  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||||||||||    
T  39535468 ctattatgtatgtagactgatga 39535490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 9812134 - 9812013
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| ||||||||| |||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  9812134 tgacttaatcatgagattacattatcataaagaacactattattaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 9812036  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||| ||||| |||||||||||||    
T  9812035 ctactatgtatgtagactgatga 9812013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 325
Target Start/End: Complemental strand, 31652181 - 31652060
Alignment:
Q  205 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 303  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||| | || || ||| | ||||| ||||||||| || ||||  ||||| ||  |||    
T  31652181 gacttaatcgtaagattacattaacataaagaatattattcttaaaagtttccatggtcgagctttattataaattgagacaatagtaaaacatagagac 31652082  T
Q  304 tattatgtgtgtagactgatga 325  Q
    || ||||| |||||||||||||    
T  31652081 tactatgtatgtagactgatga 31652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 26245006 - 26245129
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| ||   ||||||||||  ||||| || |||| ||||||||| |||  ||||||||  ||| |||   ||    
T  26245006 tgacttaatcatgagattacattatcataaagaatgttattcttaaatgtatctgtaatcaagctttaatatgaataaggataataataaagcgtcgaga 26245105  T
Q  303 ctattatgtgtgtagactgatgat 326  Q
    ||||||||| ||||||||||||||    
T  26245106 ctattatgtatgtagactgatgat 26245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 26130091 - 26130006
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    |||||||||  ||| ||||| ||||||| || ||| || ||||||||  ||||  ||||||| |||||||||||||||||||||||    
T  26130091 tgacttaatcctaatattactttaacattaagaacgctcttcttaaatgtatccgtagtcaagctttaatataaattgggataata 26130006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 325
Target Start/End: Complemental strand, 83412 - 83291
Alignment:
Q  205 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 303  Q
    ||||||||| | |||||| ||| ||| ||| || ||||||||||||| ||||  ||||| || |||||||||||||| |||||||  |||  |||| |||    
T  83412 gacttaattgtgagattaaattcacacaaagaatactattcttaaaagtatccgtagtcgaaatttaatataaattgagataataataaagtgtatagac 83313  T
Q  304 tattatgtgtgtagactgatga 325  Q
    |||||||| |||||||||||||    
T  83312 tattatgtatgtagactgatga 83291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 324
Target Start/End: Complemental strand, 40386 - 40265
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||| ||||||||| |||| ||| |||||||||||  |||| |||||||| ||||||||||||||| |||||||  ||| ||    ||    
T  40386 tgacttaatcatgagaatacattaacgtaaagaacgctattcttaaatgtatccatagtcaagctttaatataaattgagataataataaagcgccgaga 40287  T
Q  303 ctattatgtgtgtagactgatg 324  Q
    ||||||||| ||||||||||||    
T  40286 ctattatgtatgtagactgatg 40265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 11927 - 11806
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||    |    
T  11927 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatctgtagtcaatctttaatat-aattaggataataataaagcgtcgaaa 11829  T
Q  303 ctattatgtgtgtagactgatga 325  Q
    ||||||||| |||||| ||||||    
T  11828 ctattatgtatgtagattgatga 11806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 45346 - 45226
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  45346 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatattaattaggataataataaagcgtcgaga 45247  T
Q  303 ctattatgtgtgtagactgat 323  Q
    ||||||||| ||| |||||||    
T  45246 ctattatgtatgttgactgat 45226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 53682 - 53791
Alignment:
Q  217 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 315  Q
    |||||||||||||||||| |||||||||||||||  ||||  || |||| ||||||||| |||| ||||||||  |||  ||   ||||||||||| |||    
T  53682 agattacattaacataaagaacactattcttaaatgtatccgtattcaagctttaatatgaattaggataataataaagtgtcaagactattatgtatgt 53781  T
Q  316 agactgatga 325  Q
    ||| ||||||    
T  53782 agattgatga 53791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 8727568 - 8727653
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 288  Q
    ||||| ||| |||||||||| |||||||||| |||  |||||| |||  ||||| ||||||||||||||||| ||||| |||||||    
T  8727568 tgactaaatcataagattactttaacataaagaacgttattctgaaatctatctgtagtcaaactttaatatgaattgagataata 8727653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 633840 - 633960
Alignment:
Q  206 acttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgact 304  Q
    ||||||| || |||||| |||| |||||| |||| |||| |||||  ||||  ||||||| ||||||||| |||  ||||||||  ||| |||   ||||    
T  633840 acttaatcatgagattaaattatcataaagaacattatttttaaatgtatccgtagtcaagctttaatatgaataaggataataacaaagcgtcgagact 633939  T
Q  305 attatgtgtgtagactgatga 325  Q
    ||||||| |||||||||||||    
T  633940 attatgtatgtagactgatga 633960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 18835254 - 18835374
Alignment:
Q  204 tgacttaattataagattacattaacat-aaaaacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 302  Q
    ||||||||| || ||||||||||||||| ||||||  |||||||||| |||||| ||||| | |||||||||  ||||  ||||||  ||| | |   ||    
T  18835254 tgacttaatcatgagattacattaacataaaaaacgttattcttaaatatatctgtagtccagctttaatatggattgaaataataataaagcatcgaga 18835353  T
Q  303 ctattatgtgtgtagactgat 323  Q
    ||||||||| |||||||||||    
T  18835354 ctattatgtatgtagactgat 18835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 22659894 - 22659770
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaat-tgggataatataaaaacgtatt 300  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  22659894 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcaa 22659795  T
Q  301 gactattatgtgtgtagactgatga 325  Q
    ||||||||||| |||||||||||||    
T  22659794 gactattatgtatgtagactgatga 22659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 20539798 - 20539672
Alignment:
Q  204 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata-taaaaa--cgtat 299  Q
    ||||||||| ||  ||||||||||||||||| |||  |||||||||| | || | |||| || ||||||| ||||||||||||||| ||| ||  || ||    
T  20539798 tgacttaatcatgtgattacattaacataaagaacgttattcttaaatacatttgtagtaaagctttaatgtaaattgggataataataataaagcgcat 20539699  T
Q  300 tgactattatgtgtgtagactgatgat 326  Q
     ||| ||||||| ||||||||||||||    
T  20539698 agacgattatgtatgtagactgatgat 20539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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