View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0169_low_15 (Length: 309)
Name: NF0169_low_15
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_15 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 8412453 - 8412724
Alignment:
| Q |
7 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8412453 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtga |
8412552 |
T |
|
| Q |
107 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8412553 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
8412652 |
T |
|
| Q |
207 |
gactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8412653 |
gactgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8412724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 8434551 - 8434822
Alignment:
| Q |
7 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434551 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtga |
8434650 |
T |
|
| Q |
107 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434651 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
8434750 |
T |
|
| Q |
207 |
gactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8434751 |
gactgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8434822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 8394996 - 8394725
Alignment:
| Q |
7 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394996 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtga |
8394897 |
T |
|
| Q |
107 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394896 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
8394797 |
T |
|
| Q |
207 |
gactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8394796 |
gactgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8394725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 8406333 - 8406560
Alignment:
| Q |
7 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406333 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtga |
8406432 |
T |
|
| Q |
107 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406433 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
8406532 |
T |
|
| Q |
207 |
gactgcatagagttgaactgtagcatta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8406533 |
gactgcatagagttgaactgtagcatta |
8406560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 8395239 - 8395012
Alignment:
| Q |
7 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8395239 |
gcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtga |
8395140 |
T |
|
| Q |
107 |
gagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395139 |
gagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaa |
8395040 |
T |
|
| Q |
207 |
gactgcatagagttgaactgtagcatta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8395039 |
gactgcatagagttgaactgtagcatta |
8395012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 8431496 - 8431758
Alignment:
| Q |
22 |
agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta |
121 |
Q |
| |
|
|||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
8431496 |
agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta |
8431595 |
T |
|
| Q |
122 |
ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttg |
221 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
8431596 |
ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttg |
8431690 |
T |
|
| Q |
222 |
aactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgttttgatgatgt |
289 |
Q |
| |
|
|| ||| || |||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
8431691 |
aattgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatatttctgttttgttgatgt |
8431758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
| Q |
79 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
178 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | |||||||||||||| |
|
|
| T |
8417746 |
gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca |
8417845 |
T |
|
| Q |
179 |
tttctattctgtctgatacagcttccaagactgcata |
215 |
Q |
| |
|
|||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8417846 |
tttcaattctgtcagaaacaacttccaagactgcata |
8417882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
| Q |
79 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
8375475 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca |
8375376 |
T |
|
| Q |
179 |
tttctattctgtctgatacagcttccaagactgcata |
215 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8375375 |
tttcaactctatcagaaactgcttccaagattgcata |
8375339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
| Q |
79 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
8439628 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca |
8439727 |
T |
|
| Q |
179 |
tttctattctgtctgatacagcttccaagactgcata |
215 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8439728 |
tttcaactctatcagaaactgcttccaagattgcata |
8439764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
| Q |
103 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
202 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8368911 |
T |
|
| Q |
203 |
ccaagactgcatagagttga |
222 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8368912 |
caagaattgcatagagttga |
8368931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
| Q |
103 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
202 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8400499 |
T |
|
| Q |
203 |
ccaagactgcatagagttga |
222 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8400498 |
caagaattgcatagagttga |
8400479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
| Q |
103 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
202 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8422076 |
T |
|
| Q |
203 |
ccaagactgcatagagttga |
222 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8422075 |
caagaattgcatagagttga |
8422056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
| Q |
86 |
cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat |
185 |
Q |
| |
|
||||||| |||| ||| ||||| || ||||| || || |||||||||| ||| | ||||| |||| |||||||| || | ||| | ||||||||| || |
|
|
| T |
8404470 |
cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat |
8404569 |
T |
|
| Q |
186 |
tctgtctgatacagcttccaagactgcatagagtt |
220 |
Q |
| |
|
||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
8404570 |
tctgtctgatacagcctccgaaattgcatagagtt |
8404604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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