View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0169_low_17 (Length: 295)
Name: NF0169_low_17
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 30234221 - 30234488
Alignment:
| Q |
21 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30234221 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga |
30234320 |
T |
|
| Q |
121 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaaggtaacaaacacacg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30234321 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaaggtaacaaacacacg |
30234420 |
T |
|
| Q |
221 |
ctgttttgattaatg-ttttttgattttggaaatgttgcttctgtaaattcatgatgagtgatctgtg |
287 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30234421 |
ctgttttgattcatgcttttttgattttggaaatgttgcttctgtaaattcattatgagtgatctgtg |
30234488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 8425134 - 8425319
Alignment:
| Q |
21 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
8425134 |
acatcatctccgtgaagggaatcaaaggtaggttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctga |
8425233 |
T |
|
| Q |
121 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
8425234 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
8425319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 1530477 - 1530661
Alignment:
| Q |
21 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgat----ggctactgtgaagaagggaaagc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || | |
|
|
| T |
1530477 |
acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaac |
1530576 |
T |
|
| Q |
117 |
ctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactt |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
1530577 |
ctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtactt |
1530661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 22476237 - 22476053
Alignment:
| Q |
21 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgat----ggctactgtgaagaagggaaagc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
22476237 |
acatcatctctgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaac |
22476138 |
T |
|
| Q |
117 |
ctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactt |
201 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| |
|
|
| T |
22476137 |
ctgatctcatgaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtactt |
22476053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 26842255 - 26842404
Alignment:
| Q |
21 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatgg----tgatggctactgtgaagaagggaaagc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
26842255 |
acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatac |
26842354 |
T |
|
| Q |
117 |
ctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaag |
166 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
26842355 |
ctgatctcaggaagaaggttttgcgtgttgtcatcgttcgtcagcgtaag |
26842404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 39327996 - 39327808
Alignment:
| Q |
21 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga |
120 |
Q |
| |
|
||||||| ||||| || || || ||||| |||||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
39327996 |
acatcatttccgtcaaaggtattaagggaaggttgaaccgtttgccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctga |
39327897 |
T |
|
| Q |
121 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaaggta |
209 |
Q |
| |
|
|||| | |||||||| | || || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39327896 |
tctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgtaaaccatggcgccgaaaggacggtgttttcatgtacttcgaaggta |
39327808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 934 times since January 2019
Visitors: 2241