View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169_low_19 (Length: 290)
Name: NF0169_low_19
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 32333976 - 32334150
Alignment:
| Q |
61 |
acatcatcaccacaaactttaagtcattcaatttatgaatcatcttgcttatatgttgctcaacctcatattttccatccaacgtgagactttaactcac |
160 |
Q |
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| T |
32333976 |
acattatcaccacaaactttaagtcatttaatttatgaatcatctcgtttatatgtcgctcaacctcatattttccatccaacgtgagactttaactcac |
32334075 |
T |
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| Q |
161 |
actaggctaatcacaacaatctctccctcaagtgtgagactctcttcatccttgatcaaacatgtagagtctctg |
235 |
Q |
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| T |
32334076 |
actcgactaatcacaacaatctcttccttaagtgtgagactctcttcatccttgatcaaacatgtagagtctctg |
32334150 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 11442909 - 11442859
Alignment:
| Q |
112 |
tatgttgctcaacctcatattttccatccaacgtgagactttaactcacac |
162 |
Q |
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| T |
11442909 |
tatgttgctcaacctcaactcttccatccaacgtgggactttaactcacac |
11442859 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 44608208 - 44608266
Alignment:
| Q |
144 |
gtgagactttaactcacactaggctaatcacaacaatctctccctcaagtgtgagactc |
202 |
Q |
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| T |
44608208 |
gtgagactttaactcacacttaacacatcacaacaatctctccatcaagcgtgagactc |
44608266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 23041554 - 23041506
Alignment:
| Q |
149 |
actttaactcacactaggctaatcacaacaatctctccctcaagtgtga |
197 |
Q |
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| T |
23041554 |
actttaactcacacttgacatatcacaacattctctccctcaagtgtga |
23041506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 2517416 - 2517492
Alignment:
| Q |
103 |
tcttgcttatatgttgctcaacctcatattttccatccaacgtgagactttaactcacactaggctaatcacaacaa |
179 |
Q |
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| T |
2517416 |
tcttgcttatatgttgctcaaccttaactctttcattcaatgtgggactttaactcacattagacctatcacaacaa |
2517492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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