View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169_low_23 (Length: 264)
Name: NF0169_low_23
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_23 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 117390 - 117245
Alignment:
| Q |
30 |
gttacaacaacctatttaatgaatatgaagcaacaaatggatgaatcagtttttggcttcattaaatgttcataaaaatagttgtgaaatgttttggata |
129 |
Q |
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| T |
117390 |
gttacaacaacctatttaatgaatatgaagcaacaaatggatgaatcagtttttggcttcattaaatgttcataaaaatggttgtgaaatgttttggata |
117291 |
T |
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| Q |
130 |
acttcccaacgtcgaatatgtatcattggccatcaatggcatgtac |
175 |
Q |
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| T |
117290 |
acttcccaacgtcgaatatgtatcattggccatcaatggcatgtac |
117245 |
T |
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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 27874556 - 27874468
Alignment:
| Q |
176 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgt |
264 |
Q |
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| T |
27874556 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgt |
27874468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 42265654 - 42265742
Alignment:
| Q |
176 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgt |
264 |
Q |
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| T |
42265654 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgt |
42265742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 42270373 - 42270461
Alignment:
| Q |
176 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgt |
264 |
Q |
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| T |
42270373 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgt |
42270461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 9444659 - 9444570
Alignment:
| Q |
175 |
ctgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgt |
264 |
Q |
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| T |
9444659 |
ctgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaatcatgtggacaatatgactttgt |
9444570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 9439938 - 9439850
Alignment:
| Q |
176 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgt |
264 |
Q |
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| T |
9439938 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaatcatgtggacaatatgactttgt |
9439850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 54545615 - 54545703
Alignment:
| Q |
176 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgt |
264 |
Q |
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| T |
54545615 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattcttacagcatgcatggcagtaaaaacatgtggataatatgactttgt |
54545703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 34614320 - 34614276
Alignment:
| Q |
176 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgtt |
220 |
Q |
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| T |
34614320 |
tgtgaacatgtgtgaattcgtaaagccaccttttgttgaattgtt |
34614276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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