View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169_low_24 (Length: 255)
Name: NF0169_low_24
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_24 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 22388 - 22616
Alignment:
| Q |
5 |
gagcagcagagacaaaaattcaaagtcatgtacaagaggaagctatatcctcatggaaagtttgggaacctcctgatccaacaaggaggtccatgaaaac |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22388 |
gagcatcagagacaaaaattcaaagtcatgtacaagaggaagctatatcctcatggaaagtttgggaacctcctgatcgaacaaggaggtccatgaaaac |
22487 |
T |
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| Q |
105 |
caggtgataaatagaggatgtttatttaccnnnnnnnnnnaggatttcttgctatgaaactatgtgattggtctaggtcaaactatttacattttatata |
204 |
Q |
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||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22488 |
caggtgaaaaatagaggatgttt-tttactttttttttttaggatttcttgctatgaaactatgtgattggtctaggtccaactatttacattttatata |
22586 |
T |
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| Q |
205 |
gggattttatttaccatcactatgatgatg |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22587 |
gggattttatttaccatcactatgatgatg |
22616 |
T |
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