View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169_low_6 (Length: 420)
Name: NF0169_low_6
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 28741673 - 28741990
Alignment:
| Q |
2 |
gattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaa |
101 |
Q |
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| T |
28741673 |
gattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttaactagaaatgcactggtaatttagacagaaaatatttgtagtaaa |
28741772 |
T |
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| Q |
102 |
tcaaacatctaccttgtgtatcttcacatgacaaagattctagtttcacctaacatgatgatgtttcaaaaccaaaaccaaacccaatgtagcaatatat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28741773 |
tcaaacatctaccttgtgtatcttcacatgacaaagattctagtttaacctaacatgatgatgtttcaaaacaaaaaccaaacccaatgtagcaatatat |
28741872 |
T |
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| Q |
202 |
tagtttcaacacataagcatagtacaaatttcaggtccaaaattattatgacattcatttatcatgctaaataaaccagcttaatacacagcatccccca |
301 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28741873 |
tagtgtcaacacataagcatagcacaaatttcaggtccaaaattattatgacattcatttatcatgctaaataaaccagcttaatacacagcatccccca |
28741972 |
T |
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| Q |
302 |
actcaaagcttgaaatgt |
319 |
Q |
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|||||||||||||||||| |
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| T |
28741973 |
actcaaagcttgaaatgt |
28741990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 28733480 - 28733650
Alignment:
| Q |
1 |
ggattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaa |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
28733480 |
ggattcatccatgattgatatacaaatcttggaagatatccctgtcaagttatttatctagaaatgcactgataatttagacaaaaaatatttgtagtaa |
28733579 |
T |
|
| Q |
101 |
atcaaacatctaccttgtgtatcttcacatgacaaagattctagtttcacctaacatgatgatgtttcaaa |
171 |
Q |
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| || |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28733580 |
agcatacatctaccttgtgtaccttcacatgacaaatattctagtttcacctaacatgatgatgtttcaaa |
28733650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 28717810 - 28718051
Alignment:
| Q |
2 |
gattcatccatgattgatatccaaatcttggaagatatccctgtcaagttttttatctagaaa-tgcactggtaatttagacagaaaatatttgtagtaa |
100 |
Q |
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||||||||||||||| |||| || |||||||||||||||||||||||| ||| ||||||||| ||||| | ||||||||| |||| | |||||||||| |
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| T |
28717810 |
gattcatccatgattaatatacatatcttggaagatatccctgtcaagaatttcatctagaaaatgcaccgataatttagagggaaattctttgtagtaa |
28717909 |
T |
|
| Q |
101 |
atcaaacatctaccttgtgtatcttcacatgacaaagattctagtttcacctaacatgatgatgtttcaaaaccaaaaccaaacccaatgtagcaatata |
200 |
Q |
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| || |||||||||||||||| |||||||||| ||| ||||||||||||| ||| ||||||||| |||| ||||||||| | ||||||||| |
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| T |
28717910 |
agcatacatctaccttgtgtaccttcacatgaaaaatattctagtttcactaaac---atgatgttttaaaatcaaaaccaa--tgtacttagcaatatt |
28718004 |
T |
|
| Q |
201 |
ttagtttcaacacataagcatagtacaaatttcaggtccaaaattat |
247 |
Q |
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||||| |||||||||||||||| |||||||||| |||||||||||| |
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| T |
28718005 |
atagttgcaacacataagcatagcacaaatttcaagtccaaaattat |
28718051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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