View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0169_low_7 (Length: 377)
Name: NF0169_low_7
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 48070101 - 48070451
Alignment:
| Q |
6 |
agcagcagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtcagcaataataaggcatt |
105 |
Q |
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| T |
48070101 |
agcatcagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtgagcaataataaggcatt |
48070200 |
T |
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| Q |
106 |
gaagttatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattc |
205 |
Q |
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| T |
48070201 |
gaagttatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattc |
48070300 |
T |
|
| Q |
206 |
accaagagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgg |
305 |
Q |
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| T |
48070301 |
accaagagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgg |
48070400 |
T |
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| Q |
306 |
gttatagtagtccttataataaacccaaaggtgattttgattttgatgatg |
356 |
Q |
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| T |
48070401 |
gttatagtagtccttataataaacccaaaggtgattttgattttgatgatg |
48070451 |
T |
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