View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0169_low_9 (Length: 367)
Name: NF0169_low_9
Description: NF0169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0169_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 39406753 - 39406481
Alignment:
| Q |
10 |
attatactatacaccatctcttttcaactcggcggcgacggcg-catacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccac |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||| |||| ||| | |||||||||||||||||| |||||| |
|
|
| T |
39406753 |
attatactatacacggtctcttttcaactcggcggcgactgcggcgtacaccggcaacctgacattattgtgatagcatcagggcgtaggatttaaccat |
39406654 |
T |
|
| Q |
109 |
cacgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaagga |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
39406653 |
cacaaagtggttattttcgatctcagtgatgaagctttgctcgttcgaaattgtgacatcttcatagtcattgttgttttgggaccttcatcctcaagga |
39406554 |
T |
|
| Q |
209 |
agctagatcttaatcattgttgt---tgttttggagcttttattgcagaaggtgggagagaatgaggtgatga |
278 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39406553 |
agctagattttaatcattgttgttgttgttttggaggttttattgcagaaggtgggagagaatgaggagatga |
39406481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 21672349 - 21672584
Alignment:
| Q |
12 |
tatactatacaccatctcttttcaactcggcggcgacggcg-catacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccacca |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||| ||| ||| ||| ||||| |||||| ||| |||||| || |
|
|
| T |
21672349 |
tatactatacacagtctcttttcaactcggcggtgacggcggcatacaccagcaacctgacgttattgtgacaacatcatggcgtaagatttaaccatca |
21672448 |
T |
|
| Q |
111 |
cgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaaggaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||| |||| |
|
|
| T |
21672449 |
tgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgatatcttcatagtcgctgttgttttgggatcttcaacctcaaagaag |
21672548 |
T |
|
| Q |
211 |
ctagatcttaatcattgttgttgttttggagctttt |
246 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
21672549 |
ctagatcttaatcattgttcttgttttggaggtttt |
21672584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 50430994 - 50430730
Alignment:
| Q |
12 |
tatactatacaccatctcttttcaactcggcggcgacggcg-catacactagcaacctgatattactgtaacagcatcagggc-gtaggatgtaaccacc |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| | ||||| | |||| ||| ||||||| ||| |||||||| ||||||| |||| | | |
|
|
| T |
50430994 |
tatactatacaccgtctcttttcaactcggcggcgacggcggcgtacacaaacaacttgacgttactgtgacaacatcaggggtgtaggatttaacaatc |
50430895 |
T |
|
| Q |
110 |
acgaagtggttattttcgatctcagtgatgaagtttt--gctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||| | |
|
|
| T |
50430894 |
acgaagtggttattttcgatctcagtgatgaagttttttgctccttcaaaattacgacatcttcatagtcgttgttgttttgggaacttgatcctcaaag |
50430795 |
T |
|
| Q |
208 |
aagctagatcttaatcattgttgttgttttggagcttttattgcagaaggtgggagagaatgagg |
272 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||| || || ||||||||||||| |
|
|
| T |
50430794 |
aagctaaatcttaatcgttgttgttgttttggatgttttattgcataaagtaggagagaatgagg |
50430730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 873 times since January 2019
Visitors: 2241