View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171-INSERTION2 (Length: 290)
Name: NF0171-INSERTION2
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171-INSERTION2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 36944849 - 36945121
Alignment:
| Q |
8 |
aaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattctaatcacatattaattcatttgcaaacagtacttcatccttgcagtttagttc |
107 |
Q |
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| T |
36944849 |
aaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattccaaccacat------tcatttgcaaacagtacttcatccttgcagttaagttc |
36944942 |
T |
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| Q |
108 |
acctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtttcaccaactaacatctagaatgttgaattctgcattttgaaaatc |
207 |
Q |
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| T |
36944943 |
acctgaatgtctatgactgttgaccataaaatggacagaaagttacctcattgtttcaccaactaacatctagcatgttgaattctatattttgaaaatc |
36945042 |
T |
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| Q |
208 |
tccaatatgtatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
290 |
Q |
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| T |
36945043 |
tccaa----tatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
36945121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 36941700 - 36941946
Alignment:
| Q |
8 |
aaatgttgtctcatcaaatcataaaactaatttttctt--gtcaaattctaatcacatattaattcatttgcaaacagtacttcatccttgcagtttagt |
105 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
36941700 |
aaatgttgtctcatcaaatcataaaactaattttttttttgtcaaattctaaccacatattaattcatttgcaaacagtacttcatccttggagttaagt |
36941799 |
T |
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| Q |
106 |
tcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtttcacc-aactaacatctagaatgttgaattctgcattttgaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36941800 |
tcacctgaatgtctatgaccgttgaccataaaatggatagaaagttacctcattgtttcaccaaactaacatctagaatgttgaattctgcattttgaaa |
36941899 |
T |
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| Q |
205 |
atctccaatatgtatgtatctaacaacctttactcacaaatcaaaca |
251 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36941900 |
atctccaattaatatgtatctaacaacctttactcacaaatcaaaca |
36941946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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