View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0171-INSERTION5 (Length: 674)

Name: NF0171-INSERTION5
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0171-INSERTION5
NF0171-INSERTION5
[»] chr1 (1 HSPs)
chr1 (8-673)||(7020529-7021203)


Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Complemental strand, 7021203 - 7020529
Alignment:
Q  8 caccactctttgcagtaacgtatggataaagtaattaaaagtcgtcatggagatgatttgtcattattttttcatttcggtccctaattttaatctatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021203 caccactctttgcagtaacgtatggataaagtaattaaaagtcgtcatggagatgatttgtcattattttttcatttcggtccctaattttaatctatat 7021104  T
Q  108 gatttatattagttgacacttttttaaatgacttacattttttaacctgtatatcatggagatgannnnnnnattatgtgataaataaatatactatgac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  7021103 gatttatattagttgacacttttttaaatgacttacattttttaacctgtatatcatggagatgatttttttattatgtgataaataaatatactatgac 7021004  T
Q  208 tagaaaataagttattcaatgaacttagttgctttcagtcatgtcatcaactgacttagcatcttcatgtttatgtaaatgtttccgtagcagtaaggtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021003 tagaaaataagttattcaatgaacttagttgctttcagtcatgtcatcaactgacttagcatcttcatgtttatgtaaatgtttccgtagcagtaaggtt 7020904  T
Q  308 cacaatgtaatcgcaactacaaccctaaagagttgtgttattcagt-----acgagggtataataaatcatcacacaagaatataacgtaagaaatagaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7020903 cacaatgtaatcgcaactacaaccctaaagagttgtgttattcagttcagtacgagggtatagtaaatcatcacacaagaatataacgtaagaaatagaa 7020804  T
Q  403 aactttaaaacagagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtacaacacataaagttttgtttcatatgt 502  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7020803 aactttaaaacggagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtacaacacataaagttttgtttcatatgt 7020704  T
Q  503 gacgtgatttatcatgaaatttttgtttcagtttatattattcatcatgattttttgtttcatatatagtgctgattgggaggtctcatataaaaaacac 602  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  7020703 gacgtgatttatcatgaaatttttgtttcagtttatatgattcatcatgattttttgtttcatatatagtgctgattgggaggtctcatatagaagacac 7020604  T
Q  603 aagaaggatccagttcacgggctaaggt----attatcatgcaaccatgtacacagaagtgcctttttatctttt 673  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  7020603 aagaaggatccagttcacgggctaaggtattaattatcatgcaaccatgtacacagaagtgcctttttatctttt 7020529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 493 times since January 2019
Visitors: 2226