View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171-INSERTION7 (Length: 513)
Name: NF0171-INSERTION7
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171-INSERTION7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 51403246 - 51403751
Alignment:
| Q |
8 |
aactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcataggaacatccat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51403246 |
aactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctttgtggaatcacattcccatttgttcttggcataggaacatccgt |
51403345 |
T |
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| Q |
108 |
tgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51403346 |
tgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcga |
51403445 |
T |
|
| Q |
208 |
atcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttctcgctctag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51403446 |
atcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttcttgctctag |
51403545 |
T |
|
| Q |
308 |
ccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtggtactgcttttattctctttgcagtttttgctataagacc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51403546 |
ccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtggtactgcttttattctctttgcagtttttgctataagacc |
51403645 |
T |
|
| Q |
408 |
gttgcttgcatacatggctaagcgttcccctgagggtgaacctgttaaagagctttacatttgtatcacattgacattggttttggcttgtagttttgtt |
507 |
Q |
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| T |
51403646 |
gttgcttgcatacatggctaagcgttcccctgagggtgaacctgttaaagagctttacatttgtatcacattgacattggttttggcttgtagttttgtt |
51403745 |
T |
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| Q |
508 |
actgat |
513 |
Q |
| |
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|||||| |
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| T |
51403746 |
actgat |
51403751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 29983581 - 29983076
Alignment:
| Q |
8 |
aactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcataggaacatccat |
107 |
Q |
| |
|
|||||||||||||||| || || | ||||||| |||||||||| || ||||| |||||||||| |||||||||| |||||||| || || || | |
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| T |
29983581 |
aactcgacatgcgttcgatacgcaaaacaggttcaaaagccttatgcatagcccttgctggaatcacagtcccatttgtacttggcattggcacctcact |
29983482 |
T |
|
| Q |
108 |
tgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcga |
207 |
Q |
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||||||| | |||||||| ||||| ||| | || | |||||||| |||||||| ||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
29983481 |
tgttcttcgtgccacaataaacaaagatgctaatccaacttccttccttgttttcatgggcgttgctctctcgatcacagcctttcctgtccttgctcga |
29983382 |
T |
|
| Q |
208 |
atcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttctcgctctag |
307 |
Q |
| |
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||||||||||| |||||||| || || || ||||||||||| || ||||||||||| |||||||| ||||| || || || ||| ||||||| ||||| | |
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| T |
29983381 |
atcctagctgaactcaaactcctcacaaccgatgttggtcggatggcaatgtcagctgctgctgtcaatgacgtcgctgcttggatacttcttgctcttg |
29983282 |
T |
|
| Q |
308 |
ccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtggtactgcttttattctctttgcagtttttgctataagacc |
407 |
Q |
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| || | | || |||| |||| || || || | || | ||||| | || |||||| || |||||| || |||| ||||||| |||| || |
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| T |
29983281 |
cagtagctctttcaggcgccaacacttcccctcttgtatctttatgggtcctactttgtggtgttggttttatcctgtttgttatttttgccataaagcc |
29983182 |
T |
|
| Q |
408 |
gttgcttgc-atacatggctaagcgttcccctgagggtgaacctgttaaagagctttacatttgtatcacattgacattggttttggcttgtagttttgt |
506 |
Q |
| |
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|| ||||| ||| |||||||| |||| |||||||||||||||||| || ||| |||||||||| |||||||||||| | ||||||| |||||||||| | |
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| T |
29983181 |
cttacttgctata-atggctaaacgttgccctgagggtgaacctgtgaaggagatttacatttgcatcacattgacactagttttgggttgtagtttttt |
29983083 |
T |
|
| Q |
507 |
tactgat |
513 |
Q |
| |
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|||||| |
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| T |
29983082 |
aactgat |
29983076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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