View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171_high_3 (Length: 410)
Name: NF0171_high_3
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 42115527 - 42115831
Alignment:
| Q |
11 |
ttattcttagcataacaaatatcatctaaaatttggaaaaacagaaactaacattcacaagactcaacaaccttttaaaaactaataatcccttttcaag |
110 |
Q |
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| T |
42115527 |
ttattcttagcataacaaatatcatctaaaatttggaaaaacagaaactaacattcacaagactcaacaaccttttaaaaactaataatcccttttcaag |
42115626 |
T |
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| Q |
111 |
ctgctgatatttaggcaaattttaaaacagaatcagattatttttgatagatccattaagaattgaacacaaatgtgtgaaagccaatcatagagagagt |
210 |
Q |
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| T |
42115627 |
ctgctgatatttaggcaaattttaaaacagaatcagattatttttgatagatccattaagaattgaacacaaatgtgtgaaagccaatcatagagagagt |
42115726 |
T |
|
| Q |
211 |
caggagtacaaggaaggaggtaaaaaccaatgtttgatataaatcaaaaacagaactaattgttttcatgcaaatacaaaactcaattacaatgaaacat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42115727 |
caggagtacaaggaaggaggtaaaaaccaatgtttgatataaatcaaaaacagaactaattgttttcatgcaaatacaaaactcaattacaatgaaatat |
42115826 |
T |
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| Q |
311 |
gagct |
315 |
Q |
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||||| |
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| T |
42115827 |
gagct |
42115831 |
T |
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