View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171_low_1 (Length: 740)
Name: NF0171_low_1
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 62 - 569
Target Start/End: Complemental strand, 45178596 - 45178074
Alignment:
| Q |
62 |
tctatttattttgagaaatgaagaggatatttattcacaatggcggaatcctacaaattagcactttatatcttatcctannnnnnngaattgatttaaa |
161 |
Q |
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||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| || || ||||||||||||| |
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| T |
45178596 |
tctatttattttgagaaatgaagaggatactcattcgcaatggcggaaccctacaaattagcactttatatcttgtcttatttttttgaattgatttaaa |
45178497 |
T |
|
| Q |
162 |
ataggcaagatgaattttacaattgttttgatatgtctgtttttatttattt----gtgtaacacaatatacatttttcttaaaatcatctttcctatgt |
257 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45178496 |
ataggaaagatgaattttacaattgttttgatatgtctgtttttatttatttatttgtgtaacacaatatacatttttcttaaaatcatctttcctatgt |
45178397 |
T |
|
| Q |
258 |
acattcaaattcctcctcaattaaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgac |
357 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45178396 |
acattcaaattcctactcaattaaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccaatgacgac |
45178297 |
T |
|
| Q |
358 |
acaacaaatagattgacagataaatttttccagttgttttgtttgtggtag-aagctaacttataattccttgtcacaaactgtcattttgcattagtgc |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45178296 |
acaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaaagctaacttataattccttgtcacaaactgtcattttgtattagtgc |
45178197 |
T |
|
| Q |
457 |
cgtagttctgcattgggaggtatttttgagcgtaccgaaacgcattga---------tattattattatgaaacaaagatgaacagtcacggca-tttcc |
546 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
45178196 |
cgtagttctgcattaggaggtatttttgagcgtaccgaaacgcattgatattattattattattattatgaaacaaggatgaacagtcacggcattttcc |
45178097 |
T |
|
| Q |
547 |
ttttccccctttgtttgtgttga |
569 |
Q |
| |
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| T |
45178096 |
ttttccccctttgtttgtgttga |
45178074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 670 - 733
Target Start/End: Complemental strand, 45177906 - 45177843
Alignment:
| Q |
670 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcatctca |
733 |
Q |
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| T |
45177906 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
45177843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 636 - 673
Target Start/End: Complemental strand, 45178046 - 45178009
Alignment:
| Q |
636 |
aacttgctaaaatgcacattttggtattggcaaaagca |
673 |
Q |
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| T |
45178046 |
aacttgctaaaatgcacattttggtattggcaaaagca |
45178009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 45171487 - 45171387
Alignment:
| Q |
280 |
aaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgacacaacaaatagattgacagata |
379 |
Q |
| |
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|||| ||||||| || ||||||| ||||| |||||||| ||||| ||||||||| | ||||||||| || ||||||| || || || ||||||||||| |
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| T |
45171487 |
aaatgcatttctgtccagtttgttttgacggtattctttttgtattagcaggagcctgttatagaggtcaatgacgacgcagcagatgaattgacagata |
45171388 |
T |
|
| Q |
380 |
a |
380 |
Q |
| |
|
| |
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|
| T |
45171387 |
a |
45171387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 45178664 - 45178625
Alignment:
| Q |
29 |
agttaaaacaatggatggtggtgggatacaccttctattt |
68 |
Q |
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| T |
45178664 |
agttaaaacaatggatggtggtgggatacactgtctattt |
45178625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 609
Target Start/End: Complemental strand, 5904916 - 5904885
Alignment:
| Q |
578 |
aaagtgtgatttatttttataggaccaaaaat |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
5904916 |
aaagtgtgatttatttttataggaccaaaaat |
5904885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 618
Target Start/End: Complemental strand, 19928034 - 19927993
Alignment:
| Q |
578 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaat |
618 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
19928034 |
aaagtgtgatttatttttatagggaccaaaaacttaattaat |
19927993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 622
Target Start/End: Complemental strand, 10895594 - 10895549
Alignment:
| Q |
578 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaatcctt |
622 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||| |||| |
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| T |
10895594 |
aaagtgtgatttatttttatagggaccaaaaacttaattaaccctt |
10895549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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