View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171_low_12 (Length: 212)
Name: NF0171_low_12
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29744326 - 29744431
Alignment:
| Q |
1 |
aaacatcaattcccactggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
29744326 |
aaacatcaattcccactggattgagaaccatactttttccata-aaatccaacaatatagctttcttgaacaatttggcatcaaggtttaaattcttgcg |
29744424 |
T |
|
| Q |
101 |
agttttg |
107 |
Q |
| |
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||||||| |
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|
| T |
29744425 |
agttttg |
29744431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 29601935 - 29601829
Alignment:
| Q |
1 |
aaacatcaattcccactggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcg |
100 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
29601935 |
aaacaccaattcccgcaggactgagaaccatactttttccattagaagccaacaatgtagcttttttgaacaatttggcatcaaggtgtaaattcttgcg |
29601836 |
T |
|
| Q |
101 |
agttttg |
107 |
Q |
| |
|
||||||| |
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|
| T |
29601835 |
agttttg |
29601829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29751359 - 29751466
Alignment:
| Q |
1 |
aaacatcaattcccactggattgagaaccatacttttt-ccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgc |
99 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
29751359 |
aaacaccaattcccgcaggactgagaaccatacttttttccattagaagccaacaatgtagcttttttgaacaatttggcatcaaggtgtaaattcttgc |
29751458 |
T |
|
| Q |
100 |
gagttttg |
107 |
Q |
| |
|
|||||||| |
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|
| T |
29751459 |
gagttttg |
29751466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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